RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PROP1O75360 226 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 ONECUT2O95948 504 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 EBLN1P0CF75 366 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 GOLGA6DP0CG33 693 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 ZFXP17010 805 aaPredicted RBP3.49□□□□□ -1.85
CD44-238ENST00000534296 LPOP22079 712 aaPredicted RBP3.49□□□□□ -1.85
CD44-238ENST00000534296 PPIFP30405 207 aaKnown RBP3.49□□□□□ -1.85
CD44-238ENST00000534296 LRPAP1P30533 357 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 VIPR2P41587 438 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 CLK3P49761 638 aaKnown RBP3.49□□□□□ -1.85
CD44-238ENST00000534296 RAB32Q13637 225 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 E2F2Q14209 437 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 PLEKHG6Q3KR16 790 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 MGAT5BQ3V5L5 792 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 ANO6Q4KMQ2 910 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 HSP90AB2PQ58FF8 381 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 TMEM108Q6UXF1 575 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 TSHZ1Q6ZSZ6 1077 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 ZNF551Q7Z340 670 aaPredicted RBP3.49□□□□□ -1.85
CD44-238ENST00000534296 TMPRSS9Q7Z410 1059 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 ZNF575Q86XF7 245 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 TPH2Q8IWU9 490 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 OR6B3Q8NGW1 331 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 SLC35G2Q8TBE7 412 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 KBTBD7Q8WVZ9 684 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 ZNF764Q96H86 408 aaPredicted RBP3.49□□□□□ -1.85
CD44-238ENST00000534296 SUCLG2Q96I99 432 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 TIMP4Q99727 224 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 RTFDC1Q9BY42 306 aaPredicted RBP3.49□□□□□ -1.85
CD44-238ENST00000534296 SMOC2Q9H3U7 446 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 SEMA4GQ9NTN9 838 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 GOLGA6AQ9NYA3 693 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 MED16Q9Y2X0 877 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 WNT6Q9Y6F9 365 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.49□□□□□ -1.85
CD44-238ENST00000534296 CAPN8A6NHC0 703 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 PRSS29PA6NIE9 313 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 ADM5C9JUS6 153 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 QSOX1O00391 747 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 SLC16A3O15427 465 aaKnown RBP3.48□□□□□ -1.85
CD44-238ENST00000534296 TBC1D4O60343 1298 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 UBXN7O94888 489 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 IGLV2-14P01704 120 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 NR2F6P10588 404 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 WT1P19544 449 aaPredicted RBP3.48□□□□□ -1.85
CD44-238ENST00000534296 FBLP22087 321 aaKnown RBP3.48□□□□□ -1.85
CD44-238ENST00000534296 WNT3P56703 355 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 KRT17Q04695 432 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 TBCCQ15814 346 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 FAM102BQ5T8I3 360 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 SUMO4Q6EEV6 95 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 PTF1AQ7RTS3 328 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 ZBTB34Q8NCN2 500 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 FBXO41Q8TF61 875 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 SARAFQ96BY9 339 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 LRIG1Q96JA1 1093 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 BBC3Q96PG8 261 aaPredicted RBP3.48□□□□□ -1.85
CD44-238ENST00000534296 TAAR9Q96RI9 348 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 ACO2Q99798 780 aaKnown RBP3.48□□□□□ -1.85
CD44-238ENST00000534296 PTDSS2Q9BVG9 487 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 KLK15Q9H2R5 256 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 R3HDMLQ9H3Y0 253 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 GLOD4Q9HC38 313 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 ADARB2Q9NS39 739 aaKnown RBP3.48□□□□□ -1.85
CD44-238ENST00000534296 C1orf112Q9NSG2 853 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 ASB6Q9NWX5 421 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 STAP2Q9UGK3 403 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 AGAP1Q9UPQ3 857 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 SH2B3Q9UQQ2 575 aa3.48□□□□□ -1.85
CD44-238ENST00000534296 ADGRA2Q96PE1 1338 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 SALL3Q9BXA9 1300 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 LINC00473A8K010 186 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 SCGB1D2O95969 90 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 RHOP08100 348 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 HDCP19113 662 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 CCT8P50990 548 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 CACNB3P54284 484 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 LILRA4P59901 499 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 EIF2B5Q13144 721 aaKnown RBP3.47□□□□□ -1.85
CD44-238ENST00000534296 ARHGAP29Q52LW3 1261 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 ARHGAP40Q5TG30 622 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 NXNQ6DKJ4 435 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 EPM2AIP1Q7L775 607 aaPredicted RBP3.47□□□□□ -1.85
CD44-238ENST00000534296 SLC29A4Q7RTT9 530 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 WDR53Q7Z5U6 358 aaPredicted RBP3.47□□□□□ -1.85
CD44-238ENST00000534296 SLC15A3Q8IY34 581 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 MPP5Q8N3R9 675 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 SMCR8Q8TEV9 937 aaPredicted RBP3.47□□□□□ -1.85
CD44-238ENST00000534296 ZNF384Q8TF68 577 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 LRFN3Q9BTN0 628 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 AMBRA1Q9C0C7 1298 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 ALG13Q9NP73 1137 aaKnown RBP3.47□□□□□ -1.85
CD44-238ENST00000534296 ARHGEF3Q9NR81 526 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 TRMT13Q9NUP7 481 aaKnown RBP3.47□□□□□ -1.85
CD44-238ENST00000534296 VSX1Q9NZR4 365 aaPredicted RBP3.47□□□□□ -1.85
CD44-238ENST00000534296 KLHL42Q9P2K6 505 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 XPR1Q9UBH6 696 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 GABBR1Q9UBS5 961 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 CCNL1Q9UK58 526 aaPredicted RBP3.47□□□□□ -1.85
CD44-238ENST00000534296 NOB1Q9ULX3 412 aaKnown RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms