RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 C4orf50Q6ZRC1 276 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 GUF1Q8N442 669 aaKnown RBP16.16■□□□□ 0.18
USP39-217ENST00000491659 PARD3BQ8TEW8 1205 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 GIPC2Q8TF65 315 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 KBTBD7Q8WVZ9 684 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 ZSWIM3Q96MP5 696 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 PLA2G2FQ9BZM2 168 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 GZF1Q9H116 711 aaPredicted RBP16.16■□□□□ 0.18
USP39-217ENST00000491659 IRF2BPLQ9H1B7 796 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 RMND1Q9NWS8 449 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 GTF3C4Q9UKN8 822 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 CDH9Q9ULB4 789 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 MAPK8IP1Q9UQF2 711 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 TRAF3IP3Q9Y228 551 aa16.16■□□□□ 0.18
USP39-217ENST00000491659 HCRTO43612 131 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 STAU1O95793 577 aaKnown RBP16.15■□□□□ 0.18
USP39-217ENST00000491659 CST3P01034 146 aaPredicted RBP16.15■□□□□ 0.18
USP39-217ENST00000491659 COL4A2P08572 1712 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 NR2F2P24468 414 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 PRKCQQ04759 706 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 FAM160A1Q05DH4 1040 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 PNOCQ13519 176 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 GRM2Q14416 872 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 MAPRE1Q15691 268 aaKnown RBP16.15■□□□□ 0.18
USP39-217ENST00000491659 MLF2Q15773 248 aaPredicted RBP16.15■□□□□ 0.18
USP39-217ENST00000491659 NFIL3Q16649 462 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 ZNF699Q32M78 642 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 WDR72Q3MJ13 1102 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 GPR158Q5T848 1215 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 TDRD10Q5VZ19 366 aaKnown RBP16.15■□□□□ 0.18
USP39-217ENST00000491659 LIMS2Q7Z4I7 341 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 FMR1NBQ8N0W7 255 aaPredicted RBP16.15■□□□□ 0.18
USP39-217ENST00000491659 DEPDC1BQ8WUY9 529 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 ZNF516Q92618 1163 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 E2F7Q96AV8 911 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 FUBP3Q96I24 572 aaKnown RBP eCLIP16.15■□□□□ 0.18
USP39-217ENST00000491659 PKMYT1Q99640 499 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 TRMT61BQ9BVS5 477 aaKnown RBP16.15■□□□□ 0.18
USP39-217ENST00000491659 SNX25Q9H3E2 840 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 BRD9Q9H8M2 597 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 TRPV4Q9HBA0 871 aa16.15■□□□□ 0.18
USP39-217ENST00000491659 HOOK1Q9UJC3 728 aaKnown RBP16.15■□□□□ 0.18
USP39-217ENST00000491659 TACC1O75410 805 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 CSH1P0DML2 217 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 CSH2P0DML3 217 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 PSMC3P17980 439 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 CYP2F1P24903 491 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 RPL13P26373 211 aaKnown RBP16.14■□□□□ 0.17
USP39-217ENST00000491659 MYL6P60660 151 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 PSMC1P62191 440 aaKnown RBP16.14■□□□□ 0.17
USP39-217ENST00000491659 CLDN10P78369 228 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 TCF15Q12870 199 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 CFAP221Q4G0U5 840 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 SLC44A4Q53GD3 710 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 STXBP5Q5T5C0 1151 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 VITQ6UXI7 678 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 GAREM2Q75VX8 874 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 OR6B3Q8NGW1 331 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 PLEKHO2Q8TD55 490 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 TMC2Q8TDI7 906 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 DNASE1L2Q92874 299 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 MYLPFQ96A32 169 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 MRPL45Q9BRJ2 306 aaKnown RBP16.14■□□□□ 0.17
USP39-217ENST00000491659 NXF1Q9UBU9 619 aaKnown RBP16.14■□□□□ 0.17
USP39-217ENST00000491659 ZMYM5Q9UJ78 669 aa16.14■□□□□ 0.17
USP39-217ENST00000491659 ZNF638Q14966 1978 aaKnown RBP16.14■□□□□ 0.17
USP39-217ENST00000491659 MYBPHLA2RUH7 354 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 MAPK13O15264 365 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 PI15O43692 258 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 SMC2O95347 1197 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 PDGFRBP09619 1106 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 FAM163BP0C2L3 166 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 LMO2P25791 158 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 GDI1P31150 447 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 GNL1P36915 607 aaPredicted RBP16.13■□□□□ 0.17
USP39-217ENST00000491659 VIPR2P41587 438 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 GPR15P49685 360 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 STARD6P59095 220 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 CYP4F8P98187 520 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 NCOA4Q13772 614 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 CCDC142Q17RM4 750 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 ZNF667Q5HYK9 610 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 FAM171BQ6P995 826 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 CCDC105Q8IYK2 499 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 IRF7Q92985 503 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 XYLT2Q9H1B5 865 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 TASP1Q9H6P5 420 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 VRTNQ9H8Y1 702 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 IL21Q9HBE4 155 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 CRTAC1Q9NQ79 661 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 MAGEC2Q9UBF1 373 aaPredicted RBP16.13■□□□□ 0.17
USP39-217ENST00000491659 UXTQ9UBK9 157 aaPredicted RBP16.13■□□□□ 0.17
USP39-217ENST00000491659 CIZ1Q9ULV3 898 aaPredicted RBP16.13■□□□□ 0.17
USP39-217ENST00000491659 MAGED2Q9UNF1 606 aaPredicted RBP16.13■□□□□ 0.17
USP39-217ENST00000491659 COL4A3Q01955 1670 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 GREB1Q4ZG55 1949 aa16.13■□□□□ 0.17
USP39-217ENST00000491659 HEPACAM2A8MVW5 462 aa16.12■□□□□ 0.17
USP39-217ENST00000491659 DPYSL4O14531 572 aa16.12■□□□□ 0.17
USP39-217ENST00000491659 ATP2C2O75185 946 aa16.12■□□□□ 0.17
USP39-217ENST00000491659 C4BPAP04003 597 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms