RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 IER5LQ5T953 404 aa13.8□□□□□ -0.2
CHMP3-208ENST00000486404 C4orf50Q6ZRC1 276 aa13.8□□□□□ -0.2
CHMP3-208ENST00000486404 DPH6Q7L8W6 267 aa13.8□□□□□ -0.2
CHMP3-208ENST00000486404 DNAJB7Q7Z6W7 309 aaPredicted RBP13.8□□□□□ -0.2
CHMP3-208ENST00000486404 LRRTM3Q86VH5 581 aa13.8□□□□□ -0.2
CHMP3-208ENST00000486404 SLC9A9Q8IVB4 645 aa13.8□□□□□ -0.2
CHMP3-208ENST00000486404 GIPC2Q8TF65 315 aa13.8□□□□□ -0.2
CHMP3-208ENST00000486404 ZNF334Q9HCZ1 680 aaPredicted RBP13.8□□□□□ -0.2
CHMP3-208ENST00000486404 TMLHEQ9NVH6 421 aa13.8□□□□□ -0.2
CHMP3-208ENST00000486404 CDH9Q9ULB4 789 aa13.8□□□□□ -0.2
CHMP3-208ENST00000486404 MAPK8IP1Q9UQF2 711 aa13.8□□□□□ -0.2
CHMP3-208ENST00000486404 MYO16Q9Y6X6 1858 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 LRRIQ3A6PVS8 624 aaPredicted RBP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 DPYSL4O14531 572 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 KRT13P13646 458 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 WARSP23381 471 aaKnown RBP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 FCARP24071 287 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 RPL13P26373 211 aaKnown RBP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 ATICP31939 592 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 PIK3CAP42336 1068 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 MYL6P60660 151 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 CYP27A1Q02318 531 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 MLF2Q15773 248 aaPredicted RBP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 GPR158Q5T848 1215 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 TDRD10Q5VZ19 366 aaKnown RBP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 SCARA3Q6AZY7 606 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 TANGO2Q6ICL3 276 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 SCARA5Q6ZMJ2 495 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 SCN4BQ8IWT1 228 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 YAF2Q8IY57 180 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 GUF1Q8N442 669 aaKnown RBP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 DEPDC1BQ8WUY9 529 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 KBTBD7Q8WVZ9 684 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 MYLPFQ96A32 169 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 E2F7Q96AV8 911 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 FUBP3Q96I24 572 aaKnown RBP eCLIP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 TRMT61BQ9BVS5 477 aaKnown RBP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 IRF2BPLQ9H1B7 796 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 BRD9Q9H8M2 597 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 NXF1Q9UBU9 619 aaKnown RBP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 GTF3C4Q9UKN8 822 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 MAGED2Q9UNF1 606 aaPredicted RBP13.79□□□□□ -0.2
CHMP3-208ENST00000486404 COL4A3Q01955 1670 aa13.79□□□□□ -0.2
CHMP3-208ENST00000486404 PATJQ8NI35 1801 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 KIF26AQ9ULI4 1882 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-208ENST00000486404 GABRDO14764 452 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 GALR2O43603 387 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-208ENST00000486404 HCRTO43612 131 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 KINO60870 393 aaKnown RBP13.78□□□□□ -0.2
CHMP3-208ENST00000486404 MOSPD3O75425 235 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 CSH1P0DML2 217 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 CSH2P0DML3 217 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 P4HA1P13674 534 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 NPR3P17342 541 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 PSMC3P17980 439 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 CYP2F1P24903 491 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 ANXA13P27216 316 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 GPR15P49685 360 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 CYP4F8P98187 520 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 NHLH1Q02575 133 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 PRKCQQ04759 706 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 NCOA4Q13772 614 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 CCDC142Q17RM4 750 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 CFAP221Q4G0U5 840 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 ZNF667Q5HYK9 610 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 STXBP5Q5T5C0 1151 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 FMR1NBQ8N0W7 255 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-208ENST00000486404 OR6B3Q8NGW1 331 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 PLEKHO2Q8TD55 490 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 PARD3BQ8TEW8 1205 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 DNASE1L2Q92874 299 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 SMARCE1Q969G3 411 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 ZSWIM3Q96MP5 696 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 TSG101Q99816 390 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 LRRC3Q9BY71 257 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 IMPG2Q9BZV3 1241 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 GZF1Q9H116 711 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-208ENST00000486404 DMAC2Q9NW81 257 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 UXTQ9UBK9 157 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-208ENST00000486404 CIZ1Q9ULV3 898 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-208ENST00000486404 TRAF3IP3Q9Y228 551 aa13.78□□□□□ -0.2
CHMP3-208ENST00000486404 MYBPHLA2RUH7 354 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 NRG2O14511 850 aaPredicted RBP13.77□□□□□ -0.21
CHMP3-208ENST00000486404 ATP8B3O60423 1300 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 TACC1O75410 805 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 STAU1O95793 577 aaKnown RBP13.77□□□□□ -0.21
CHMP3-208ENST00000486404 PDGFRBP09619 1106 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 GDI1P31150 447 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 GNL1P36915 607 aaPredicted RBP13.77□□□□□ -0.21
CHMP3-208ENST00000486404 VIPR2P41587 438 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 MDH1BQ5I0G3 518 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 SDHAF4Q5VUM1 108 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 PHLDB3Q6NSJ2 640 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 VITQ6UXI7 678 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 WDFY4Q6ZS81 3184 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 TPRG1Q6ZUI0 275 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 INTS8Q75QN2 995 aaKnown RBP13.77□□□□□ -0.21
CHMP3-208ENST00000486404 GAREM2Q75VX8 874 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 CCDC105Q8IYK2 499 aa13.77□□□□□ -0.21
CHMP3-208ENST00000486404 FAM186BQ8IYM0 893 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms