RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 ITIH5Q86UX2 942 aa23.36■■□□□ 1.33
LIME1-203ENST00000465591 SPATA18Q8TC71 538 aa23.36■■□□□ 1.33
LIME1-203ENST00000465591 DDX23Q9BUQ8 820 aaKnown RBP23.36■■□□□ 1.33
LIME1-203ENST00000465591 ATXN3LQ9H3M9 355 aa23.36■■□□□ 1.33
LIME1-203ENST00000465591 SLITRK6Q9H5Y7 841 aa23.36■■□□□ 1.33
LIME1-203ENST00000465591 TRPV4Q9HBA0 871 aa23.36■■□□□ 1.33
LIME1-203ENST00000465591 GREB1Q4ZG55 1949 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 SHISA7A6NL88 538 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 RHOBTB3O94955 611 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 DCNP07585 359 aaKnown RBP23.35■■□□□ 1.33
LIME1-203ENST00000465591 GLULP15104 373 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 HMGA1P17096 107 aaKnown RBP23.35■■□□□ 1.33
LIME1-203ENST00000465591 RFX1P22670 979 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 CYP2F1P24903 491 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 LHX1P48742 406 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 CYP4F8P98187 520 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 NFE2Q16621 373 aaPredicted RBP23.35■■□□□ 1.33
LIME1-203ENST00000465591 DPH6Q7L8W6 267 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 SLC9A9Q8IVB4 645 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 DTWD2Q8NBA8 298 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 GOLGA5Q8TBA6 731 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 DLGAP2Q9P1A6 1054 aa23.35■■□□□ 1.33
LIME1-203ENST00000465591 R3HCC1Q9Y3T6 440 aaKnown RBP23.35■■□□□ 1.33
LIME1-203ENST00000465591 LRRIQ3A6PVS8 624 aaPredicted RBP23.34■■□□□ 1.33
LIME1-203ENST00000465591 PRPF40AO75400 957 aaKnown RBP23.34■■□□□ 1.33
LIME1-203ENST00000465591 NR3C1P04150 777 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 CD72P21854 359 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 MRE11P49959 708 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 MYL6P60660 151 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 PSMC1P62191 440 aaKnown RBP23.34■■□□□ 1.33
LIME1-203ENST00000465591 PFKPQ01813 784 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 VEPH1Q14D04 833 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 TMEM150AQ86TG1 271 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 PJA1Q8NG27 643 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 PARD3BQ8TEW8 1205 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 TMEM174Q8WUU8 243 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 ELMO3Q96BJ8 720 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 LRRC3BQ96PB8 259 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 MRPL45Q9BRJ2 306 aaKnown RBP23.34■■□□□ 1.33
LIME1-203ENST00000465591 XYLT2Q9H1B5 865 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 CRTAC1Q9NQ79 661 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 HEBP1Q9NRV9 189 aa23.34■■□□□ 1.33
LIME1-203ENST00000465591 MTF2Q9Y483 593 aaPredicted RBP23.34■■□□□ 1.33
LIME1-203ENST00000465591 ZNF638Q14966 1978 aaKnown RBP23.34■■□□□ 1.33
LIME1-203ENST00000465591 HEPACAM2A8MVW5 462 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 PDXKO00764 312 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 WARSP23381 471 aaKnown RBP23.33■■□□□ 1.33
LIME1-203ENST00000465591 PCSK1P29120 753 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 DLG4P78352 724 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 DDR2Q16832 855 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 GPR158Q5T848 1215 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 TDRD10Q5VZ19 366 aaKnown RBP23.33■■□□□ 1.33
LIME1-203ENST00000465591 FAM171BQ6P995 826 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 ARID3BQ8IVW6 561 aaPredicted RBP23.33■■□□□ 1.33
LIME1-203ENST00000465591 ATOH1Q92858 354 aaPredicted RBP23.33■■□□□ 1.33
LIME1-203ENST00000465591 MMS19Q96T76 1030 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 SYT15Q9BQS2 421 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 TRMT61BQ9BVS5 477 aaKnown RBP23.33■■□□□ 1.33
LIME1-203ENST00000465591 GPR88Q9GZN0 384 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 MAPK8IP1Q9UQF2 711 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 SIT1Q9Y3P8 196 aa23.33■■□□□ 1.33
LIME1-203ENST00000465591 KANSL1LA0AUZ9 987 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 PDGFRBP09619 1106 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 PSMC3P17980 439 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 GDI1P31150 447 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 CLDN10P78369 228 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 PRKCQQ04759 706 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 TPRG1Q6ZUI0 275 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 SHDQ96IW2 340 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 BRD9Q9H8M2 597 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 ABCB6Q9NP58 842 aa23.32■■□□□ 1.32
LIME1-203ENST00000465591 ANAPC1Q9H1A4 1944 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 VNN1O95497 513 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 PRAMEF12O95522 483 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 F11P03951 625 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 C4BPAP04003 597 aaKnown RBP23.31■■□□□ 1.32
LIME1-203ENST00000465591 NUCB2P80303 420 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 WDR72Q3MJ13 1102 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 MFSD6LQ8IWD5 586 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 FMR1NBQ8N0W7 255 aaPredicted RBP23.31■■□□□ 1.32
LIME1-203ENST00000465591 DEPDC1BQ8WUY9 529 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 DNASE1L2Q92874 299 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 MYLPFQ96A32 169 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 CDH9Q9ULB4 789 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 TRAF3IP3Q9Y228 551 aa23.31■■□□□ 1.32
LIME1-203ENST00000465591 ZFHX2Q9C0A1 2572 aaPredicted RBP23.3■■□□□ 1.32
LIME1-203ENST00000465591 ARNTLO00327 626 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 FGF19O95750 216 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 STAU1O95793 577 aaKnown RBP23.3■■□□□ 1.32
LIME1-203ENST00000465591 CDC25CP30307 473 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 NLRP12P59046 1061 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 TRPC3Q13507 836 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 KCNB1Q14721 858 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 ANGPT1Q15389 498 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 TAF12Q16514 161 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 CFAP221Q4G0U5 840 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 C1orf220Q5T0J3 134 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 SPATA2LQ8IUW3 424 aaPredicted RBP23.3■■□□□ 1.32
LIME1-203ENST00000465591 SLC46A2Q9BY10 475 aa23.3■■□□□ 1.32
LIME1-203ENST00000465591 SMG9Q9H0W8 520 aaKnown RBP23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms