RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 SLITRK6Q9H5Y7 841 aa24.62■■□□□ 1.53
PTPN4-208ENST00000460289 CA14Q9ULX7 337 aa24.62■■□□□ 1.53
PTPN4-208ENST00000460289 KRBA1A5PL33 1030 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 C4BPAP04003 597 aaKnown RBP24.61■■□□□ 1.53
PTPN4-208ENST00000460289 NPR3P17342 541 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 RFX1P22670 979 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 GABRR2P28476 465 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 GNL1P36915 607 aaPredicted RBP24.61■■□□□ 1.53
PTPN4-208ENST00000460289 PLA2G5P39877 138 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 MYL6P60660 151 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 RPL10AP62906 217 aaKnown RBP24.61■■□□□ 1.53
PTPN4-208ENST00000460289 CFAP221Q4G0U5 840 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 ARHGAP15Q53QZ3 475 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 TDRD10Q5VZ19 366 aaKnown RBP24.61■■□□□ 1.53
PTPN4-208ENST00000460289 FAM171BQ6P995 826 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 C4orf50Q6ZRC1 276 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 SPATA2LQ8IUW3 424 aaPredicted RBP24.61■■□□□ 1.53
PTPN4-208ENST00000460289 ZSCAN18Q8TBC5 510 aaPredicted RBP24.61■■□□□ 1.53
PTPN4-208ENST00000460289 GIPC2Q8TF65 315 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 E2F7Q96AV8 911 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 FUBP3Q96I24 572 aaKnown RBP eCLIP24.61■■□□□ 1.53
PTPN4-208ENST00000460289 SHDQ96IW2 340 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 SYT15Q9BQS2 421 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 ATXN3LQ9H3M9 355 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 TRPV4Q9HBA0 871 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 ZNF334Q9HCZ1 680 aaPredicted RBP24.61■■□□□ 1.53
PTPN4-208ENST00000460289 ARHGEF3Q9NR81 526 aa24.61■■□□□ 1.53
PTPN4-208ENST00000460289 MYBPHLA2RUH7 354 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 NRG2O14511 850 aaPredicted RBP24.6■■□□□ 1.53
PTPN4-208ENST00000460289 AOC1P19801 751 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 LMO2P25791 158 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 CDC25CP30307 473 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 ADAM9Q13443 819 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 NCOA4Q13772 614 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 INTS8Q75QN2 995 aaKnown RBP24.6■■□□□ 1.53
PTPN4-208ENST00000460289 GAREM2Q75VX8 874 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 ELOA2Q8IYF1 753 aaPredicted RBP24.6■■□□□ 1.53
PTPN4-208ENST00000460289 TMEM105Q8N8V8 129 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 SMARCE1Q969G3 411 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 GCNAQ96QF7 691 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 PLA2G2FQ9BZM2 168 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 XYLT2Q9H1B5 865 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 VRTNQ9H8Y1 702 aa24.6■■□□□ 1.53
PTPN4-208ENST00000460289 NXF1Q9UBU9 619 aaKnown RBP24.6■■□□□ 1.53
PTPN4-208ENST00000460289 PDGFRBP09619 1106 aa24.59■■□□□ 1.53
PTPN4-208ENST00000460289 CSH1P0DML2 217 aa24.59■■□□□ 1.53
PTPN4-208ENST00000460289 CSH2P0DML3 217 aa24.59■■□□□ 1.53
PTPN4-208ENST00000460289 FCARP24071 287 aa24.59■■□□□ 1.53
PTPN4-208ENST00000460289 CYP2F1P24903 491 aa24.59■■□□□ 1.53
PTPN4-208ENST00000460289 PSMC2P35998 433 aaKnown RBP24.59■■□□□ 1.53
PTPN4-208ENST00000460289 DLG4P78352 724 aa24.59■■□□□ 1.53
PTPN4-208ENST00000460289 EDRF1Q3B7T1 1238 aa24.59■■□□□ 1.53
PTPN4-208ENST00000460289 ZNF658Q5TYW1 1059 aaPredicted RBP24.59■■□□□ 1.53
PTPN4-208ENST00000460289 PHLDB3Q6NSJ2 640 aa24.59■■□□□ 1.53
PTPN4-208ENST00000460289 OR6B3Q8NGW1 331 aa24.59■■□□□ 1.53
PTPN4-208ENST00000460289 MAGEC2Q9UBF1 373 aaPredicted RBP24.59■■□□□ 1.53
PTPN4-208ENST00000460289 HCRTO43612 131 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 AKAP3O75969 853 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 KRT13P13646 458 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 VAMP7P51809 220 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 ENPEPQ07075 957 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 SGSM1Q2NKQ1 1148 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 ZNF699Q32M78 642 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 ZACNQ401N2 412 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 SLC44A4Q53GD3 710 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 ZNF667Q5HYK9 610 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 CWF19L1Q69YN2 538 aaKnown RBP24.58■■□□□ 1.53
PTPN4-208ENST00000460289 SPATA20Q8TB22 786 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 MRPL45Q9BRJ2 306 aaKnown RBP24.58■■□□□ 1.53
PTPN4-208ENST00000460289 TRMT61BQ9BVS5 477 aaKnown RBP24.58■■□□□ 1.53
PTPN4-208ENST00000460289 ZMYM5Q9UJ78 669 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 PCDHA5Q9Y5H7 936 aa24.58■■□□□ 1.53
PTPN4-208ENST00000460289 ATP2C2O75185 946 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 CLSTN1O94985 981 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 PSMC3P17980 439 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 MAGEA11P43364 429 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 PTPN5P54829 565 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 PSMC1P62191 440 aaKnown RBP24.57■■□□□ 1.52
PTPN4-208ENST00000460289 PRKCQQ04759 706 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 DDR2Q16832 855 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 ZCWPW2Q504Y3 356 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 COBLL1Q53SF7 1204 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 FAM186BQ8IYM0 893 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 SMYD4Q8IYR2 804 aaPredicted RBP24.57■■□□□ 1.52
PTPN4-208ENST00000460289 MYCBPAPQ8TBZ2 947 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 DEPDC1BQ8WUY9 529 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 TAF4BQ92750 862 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 IRF2BPLQ9H1B7 796 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 TBC1D17Q9HA65 648 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 IL21Q9HBE4 155 aa24.57■■□□□ 1.52
PTPN4-208ENST00000460289 KINO60870 393 aaKnown RBP24.56■■□□□ 1.52
PTPN4-208ENST00000460289 VNN1O95497 513 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 P4HA1P13674 534 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 VIPR2P41587 438 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 PRCPP42785 496 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 STARD6P59095 220 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 GPR158Q5T848 1215 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 VSTM1Q6UX27 236 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 SV2AQ7L0J3 742 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 MFSD6LQ8IWD5 586 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms