RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 TACC1O75410 805 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 FAM163BP0C2L3 166 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 CYP2F1P24903 491 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 PSMC2P35998 433 aaKnown RBP13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 GNL1P36915 607 aaPredicted RBP13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 GPR15P49685 360 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 VAMP7P51809 220 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 VCPP55072 806 aaKnown RBP13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 PSMC1P62191 440 aaKnown RBP13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 GPC5P78333 572 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 NCOA4Q13772 614 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 EDRF1Q3B7T1 1238 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 COBLL1Q53SF7 1204 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 ISM2Q6H9L7 571 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 GAREM2Q75VX8 874 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 SV2AQ7L0J3 742 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 SIX5Q8N196 739 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 SYAP1Q96A49 352 aaPredicted RBP13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 EEF2KMTQ96G04 330 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 VRTNQ9H8Y1 702 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 ABCB6Q9NP58 842 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 CRTAC1Q9NQ79 661 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 SLC2A4RGQ9NR83 387 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 NXF1Q9UBU9 619 aaKnown RBP13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 CDH9Q9ULB4 789 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 ZNF318Q5VUA4 2279 aa13.64□□□□□ -0.23
PRPF40A-203ENST00000448428 PTPRDP23468 1912 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 GREB1Q4ZG55 1949 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 KRBA1A5PL33 1030 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 ECI2O75521 394 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 NPR3P17342 541 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 FCARP24071 287 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 AVPR2P30518 371 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 ANP32AP39687 249 aaKnown RBP13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 MCCD1P59942 119 aaPredicted RBP13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 TNNC1P63316 161 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 VEPH1Q14D04 833 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 ZACNQ401N2 412 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 IER5LQ5T953 404 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 SDHAF4Q5VUM1 108 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 INTS8Q75QN2 995 aaKnown RBP13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 SPATA2LQ8IUW3 424 aaPredicted RBP13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 FAM186BQ8IYM0 893 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 SMARCD2Q92925 531 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 ELSPBP1Q96BH3 223 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 ASB16Q96NS5 453 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 SYT15Q9BQS2 421 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 GPR88Q9GZN0 384 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 SNX25Q9H3E2 840 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 MFSD1Q9H3U5 465 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 IL21Q9HBE4 155 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 CA14Q9ULX7 337 aa13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 ARIH1Q9Y4X5 557 aaPredicted RBP13.63□□□□□ -0.23
PRPF40A-203ENST00000448428 OBSL1O75147 1896 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 TRIM49P0CI25 452 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 TRIM49CP0CI26 452 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 KRT13P13646 458 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 HMGA1P17096 107 aaKnown RBP13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 GABRR2P28476 465 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 VIPR2P41587 438 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 PMS1P54277 932 aaKnown RBP13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 CDH8P55286 799 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 RPL10AP62906 217 aaKnown RBP13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 PPP3CAQ08209 521 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 TAF12Q16514 161 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 DDR2Q16832 855 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 SGSM1Q2NKQ1 1148 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 ZNF699Q32M78 642 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 CFAP221Q4G0U5 840 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 ZNF667Q5HYK9 610 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 STXBP5Q5T5C0 1151 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 ANKRD40Q6AI12 368 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 GPIHBP1Q8IV16 184 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 ADSSL1Q8N142 457 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 STKLD1Q8NE28 680 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 OR6B3Q8NGW1 331 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 ZSCAN18Q8TBC5 510 aaPredicted RBP13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 MYCBPAPQ8TBZ2 947 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 ATXN3LQ9H3M9 355 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 ZFP14Q9HCL3 533 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 MAGEC2Q9UBF1 373 aaPredicted RBP13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 MAN1B1Q9UKM7 699 aa13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 ZNF638Q14966 1978 aaKnown RBP13.62□□□□□ -0.23
PRPF40A-203ENST00000448428 CETN3O15182 167 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 PI15O43692 258 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 FGF19O95750 216 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 HLA-DRAP01903 254 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 PTPN1P18031 435 aaKnown RBP13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 RAP1GAPP47736 663 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 GCLMP48507 274 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 CLCN5P51795 746 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 ENPEPQ07075 957 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 ASTLQ6HA08 431 aaPredicted RBP13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 C4orf50Q6ZRC1 276 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 TMEM150AQ86TG1 271 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 SCN4BQ8IWT1 228 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 TMEM105Q8N8V8 129 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 FLCNQ8NFG4 579 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 MYLPFQ96A32 169 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 PCED1BQ96HM7 432 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms