RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TMEM121Q9BTD3 319 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 CPSF3Q9UKF6 684 aaKnown RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 SMG5Q9UPR3 1016 aaKnown RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 EFR3BQ9Y2G0 817 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 IFNB1P01574 187 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 SRGAP2CP0DJJ0 459 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 TGFB3P10600 412 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 EZRP15311 586 aaKnown RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 NQO1P15559 274 aaKnown RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 WDR4P57081 412 aaKnown RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 YWHAEP62258 255 aaKnown RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 ZNF268Q14587 947 aaPredicted RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 FASTKD3Q14CZ7 662 aaKnown RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 ZNF699Q32M78 642 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 CDCA2Q69YH5 1023 aaPredicted RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 TRPM4Q8TD43 1214 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 ACSF2Q96CM8 615 aaPredicted RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 TRABDQ9H4I3 376 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 AGTPBP1Q9UPW5 1226 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 PRKCBP05771 671 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 FOXN2P32314 431 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 MAP2K2P36507 400 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 LACTBP83111 547 aaPredicted RBP17.28■□□□□ 0.36
HOXD3-201ENST00000249440 TFAMQ00059 246 aaKnown RBP17.28■□□□□ 0.36
HOXD3-201ENST00000249440 PDE4CQ08493 712 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 SPARCL1Q14515 664 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 RASA2Q15283 850 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 CYP4A22Q5TCH4 519 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 CGB2Q6NT52 195 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 SLC35B2Q8TB61 432 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 TFAP2BQ92481 460 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 KLHL29Q96CT2 875 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 FRMD8P1Q9BZ68 369 aaPredicted RBP17.28■□□□□ 0.36
HOXD3-201ENST00000249440 SLC24A2Q9UI40 661 aa17.28■□□□□ 0.36
HOXD3-201ENST00000249440 MAGEB2O15479 319 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 GAS2O43903 313 aaKnown RBP17.27■□□□□ 0.36
HOXD3-201ENST00000249440 SPAG7O75391 227 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 KRT7P08729 469 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 KRT3P12035 628 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 PSMA2P25787 234 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 LAMTOR4Q0VGL1 99 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 PDIA2Q13087 525 aaKnown RBP17.27■□□□□ 0.36
HOXD3-201ENST00000249440 SH3D19Q5HYK7 790 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 HP1BP3Q5SSJ5 553 aaPredicted RBP17.27■□□□□ 0.36
HOXD3-201ENST00000249440 METTL7BQ6UX53 244 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 RPAINQ86UA6 219 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 EXOC8Q8IYI6 725 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 TTC13Q8NBP0 860 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 RNF149Q8NC42 400 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 STARD13Q9Y3M8 1113 aa17.27■□□□□ 0.36
HOXD3-201ENST00000249440 POLR2AP24928 1970 aaKnown RBP17.27■□□□□ 0.36
HOXD3-201ENST00000249440 A0A1B0GUA9 196 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 SIGLEC16A6NMB1 481 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 TNNC2P02585 160 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 EDNRBP24530 442 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 RFC1P35251 1148 aaPredicted RBP17.27■□□□□ 0.35
HOXD3-201ENST00000249440 ASPAP45381 313 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 CCDC15Q0P6D6 951 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 HADHQ16836 314 aaKnown RBP17.27■□□□□ 0.35
HOXD3-201ENST00000249440 NOL9Q5SY16 702 aaKnown RBP17.27■□□□□ 0.35
HOXD3-201ENST00000249440 LBX2Q6XYB7 198 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 SCARA5Q6ZMJ2 495 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 DENND1AQ8TEH3 1009 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 PRCCQ92733 491 aaPredicted RBP17.27■□□□□ 0.35
HOXD3-201ENST00000249440 RMDN2Q96LZ7 410 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 NCAPGQ9BPX3 1015 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 C2orf40Q9H1Z8 148 aa17.27■□□□□ 0.35
HOXD3-201ENST00000249440 MED7O43513 233 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 HOXC6P09630 235 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 KCNJ2P63252 427 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 PKN2Q16513 984 aaKnown RBP17.26■□□□□ 0.35
HOXD3-201ENST00000249440 HIF1AQ16665 826 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 FNIP1Q8TF40 1166 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 ANKRD36BP1Q96IX9 119 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 PHACTR1Q9C0D0 580 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 LHX5Q9H2C1 402 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 C3orf70A6NLC5 250 aaPredicted RBP17.26■□□□□ 0.35
HOXD3-201ENST00000249440 ABLIM1O14639 778 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 PHBP35232 272 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 SKIV2L2P42285 1042 aaKnown RBP17.26■□□□□ 0.35
HOXD3-201ENST00000249440 HIRAP54198 1017 aaPredicted RBP17.26■□□□□ 0.35
HOXD3-201ENST00000249440 SLC25A11Q02978 314 aaKnown RBP17.26■□□□□ 0.35
HOXD3-201ENST00000249440 RGS9BPQ6ZS82 235 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 CAPN12Q6ZSI9 719 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 FAM47EQ6ZV65 393 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 PPIL6Q8IXY8 311 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 XYLT2Q9H1B5 865 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 ZWILCHQ9H900 591 aa17.26■□□□□ 0.35
HOXD3-201ENST00000249440 PSMC3IPQ9P2W1 217 aaPredicted RBP17.26■□□□□ 0.35
HOXD3-201ENST00000249440 FARP1Q9Y4F1 1045 aaPredicted RBP17.26■□□□□ 0.35
HOXD3-201ENST00000249440 GOLGA8SH3BPF8 625 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 IGF2BP3O00425 579 aaKnown RBP eCLIP17.25■□□□□ 0.35
HOXD3-201ENST00000249440 LRCH4O75427 683 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 CD19P15391 556 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 DYNLT1P63172 113 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 OTUD4Q01804 1114 aaKnown RBP17.25■□□□□ 0.35
HOXD3-201ENST00000249440 MGAT5Q09328 741 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 E2F5Q15329 346 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 PTPN20Q4JDL3 420 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 MPZL3Q6UWV2 235 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms