RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 MMS19Q96T76 1030 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 LACRTQ9GZZ8 138 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 NRDE2Q9H7Z3 1164 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 HMGXB4Q9UGU5 601 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 PLXNA3P51805 1871 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 THAP12O43422 761 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 ETF1P62495 437 aaKnown RBP12.48□□□□□ -0.41
PDPN-211ENST00000617617 PTP4A2Q12974 167 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 PTPN14Q15678 1187 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 TIGD5Q53EQ6 642 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 SGO2Q562F6 1265 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.48□□□□□ -0.41
PDPN-211ENST00000617617 MON1BQ7L1V2 547 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 PALB2Q86YC2 1186 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 RNF168Q8IYW5 571 aaPredicted RBP12.48□□□□□ -0.41
PDPN-211ENST00000617617 COLEC11Q9BWP8 271 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 SNX25Q9H3E2 840 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 LCMT1Q9UIC8 334 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 CDH9Q9ULB4 789 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 GBF1Q92538 1859 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 CASTOR2A6NHX0 329 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 B4GALT3O60512 393 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 GABRB2P47870 512 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 GALCP54803 685 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 FPGSQ05932 587 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 ARHGAP29Q52LW3 1261 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 PSRC1Q6PGN9 363 aaPredicted RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 RHOT2Q8IXI1 618 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 PKMYT1Q99640 499 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 ACBD6Q9BR61 282 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 CWH43Q9H720 699 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 ACP6Q9NPH0 428 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 TRMT1Q9NXH9 659 aaKnown RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 STK39Q9UEW8 545 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 GTF3C4Q9UKN8 822 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 INPP5FQ9Y2H2 1132 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 PCDHGC5Q9Y5F6 944 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 GREB1Q4ZG55 1949 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 TRAPPC3O43617 180 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 OAZ2O95190 189 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 KIF4AO95239 1232 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 HTRA4P83105 476 aaPredicted RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 ELAVL2Q12926 359 aaKnown RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 MRPL58Q14197 206 aaKnown RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 IFI16Q16666 785 aaKnown RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 OSTM1Q86WC4 334 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 GPR65Q8IYL9 337 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 TMEM35BQ8NCS4 154 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 PHOSPHO2Q8TCD6 241 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 RFFLQ8WZ73 363 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 HERVK_113Q902F9 699 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 FAM193BQ96PV7 902 aaPredicted RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 PAAF1Q9BRP4 392 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 UBXN6Q9BZV1 441 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 FTLP02792 175 aaPredicted RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 MMP8P22894 467 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 GPC5P78333 572 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 FAM171BQ6P995 826 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 C16orf59Q7L2K0 433 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 MCOLN2Q8IZK6 566 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 WDTC1Q8N5D0 677 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 HNRNPABQ99729 332 aaKnown RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 PRDM5Q9NQX1 630 aaPredicted RBP12.47□□□□□ -0.41
PDPN-211ENST00000617617 MARCH5Q9NX47 278 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 TAS2R14Q9NYV8 317 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 UVRAGQ9P2Y5 699 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 PRKAG2Q9UGJ0 569 aa12.47□□□□□ -0.41
PDPN-211ENST00000617617 TULP1O00294 542 aaPredicted RBP12.46□□□□□ -0.41
PDPN-211ENST00000617617 KIF5CO60282 957 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 B3GAT3O94766 335 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 FGFR3P22607 806 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 BRD2P25440 801 aaKnown RBP12.46□□□□□ -0.41
PDPN-211ENST00000617617 PCSK1P29120 753 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 RASIP1Q5U651 963 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 DSTYKQ6XUX3 929 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 SLFN11Q7Z7L1 901 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 METTL23Q86XA0 190 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 RTP3Q9BQQ7 232 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 CEP83Q9Y592 693 aa12.46□□□□□ -0.41
PDPN-211ENST00000617617 A0A0U1RQJ8 604 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 TCRBV5S1A1TA0A578 114 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 A8MXQ7 604 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 CALB1P05937 261 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 GALTP07902 379 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 PLCB3Q01970 1234 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 RNASELQ05823 741 aaKnown RBP12.46□□□□□ -0.42
PDPN-211ENST00000617617 TAF3Q5VWG9 929 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 WSCD1Q658N2 575 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 TRIM58Q8NG06 486 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 OR6B3Q8NGW1 331 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 ATRIPQ8WXE1 791 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 CTNNBL1Q8WYA6 563 aaPredicted RBP12.46□□□□□ -0.42
PDPN-211ENST00000617617 SECISBP2LQ93073 1101 aaKnown RBP12.46□□□□□ -0.42
PDPN-211ENST00000617617 PACSIN1Q9BY11 444 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 MIS12Q9H081 205 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 RRAGDQ9NQL2 400 aaPredicted RBP12.46□□□□□ -0.42
PDPN-211ENST00000617617 ADAM28Q9UKQ2 775 aa12.46□□□□□ -0.42
PDPN-211ENST00000617617 PLXNA4Q9HCM2 1894 aa12.45□□□□□ -0.42
PDPN-211ENST00000617617 TBKBP1A7MCY6 615 aa12.45□□□□□ -0.42
PDPN-211ENST00000617617 NRP1O14786 923 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms