RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 CA14Q9ULX7 337 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 SNX9Q9Y5X1 595 aa13.07□□□□□ -0.32
LIG1-217ENST00000599165 ECI2O75521 394 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 RHOBTB3O94955 611 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 MYL1P05976 194 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 KRT19P08727 400 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 HAPLN1P10915 354 aaPredicted RBP13.06□□□□□ -0.32
LIG1-217ENST00000599165 MYL4P12829 197 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 AOC1P19801 751 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 GPR15P49685 360 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 CLCN5P51795 746 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 CLDN10P78369 228 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 DUOXA2Q1HG44 320 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 C1orf220Q5T0J3 134 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 MTSS1LQ765P7 747 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 HS2ST1Q7LGA3 356 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 DNAJB7Q7Z6W7 309 aaPredicted RBP13.06□□□□□ -0.32
LIG1-217ENST00000599165 SLC9A9Q8IVB4 645 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 FMR1NBQ8N0W7 255 aaPredicted RBP13.06□□□□□ -0.32
LIG1-217ENST00000599165 TOP6BLQ8N6T0 577 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 STKLD1Q8NE28 680 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 ENGASEQ8NFI3 743 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 CCDC127Q96BQ5 260 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 FAM122AQ96E09 287 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 HPDLQ96IR7 371 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 ANKRD36BP1Q96IX9 119 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 ZNF512Q96ME7 567 aaPredicted RBP13.06□□□□□ -0.32
LIG1-217ENST00000599165 ASB16Q96NS5 453 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 XYLT2Q9H1B5 865 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 ASAH2Q9NR71 780 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 EXOC1Q9NV70 894 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 DDX43Q9NXZ2 648 aaKnown RBP13.06□□□□□ -0.32
LIG1-217ENST00000599165 ATP6V1DQ9Y5K8 247 aa13.06□□□□□ -0.32
LIG1-217ENST00000599165 MYO15AQ9UKN7 3530 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 ZNF638Q14966 1978 aaKnown RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 PATJQ8NI35 1801 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 A0A1W2PRU2 124 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 TULP1O00294 542 aaPredicted RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 ZNF197O14709 1029 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 ATP2C2O75185 946 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 ZNF202O95125 648 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 DLATP10515 647 aaKnown RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 HMGA1P17096 107 aaKnown RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 LMO2P25791 158 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 HOXD11P31277 338 aaPredicted RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 EPHB3P54753 998 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 DLG4P78352 724 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 PSMD2Q13200 908 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 SNW1Q13573 536 aaKnown RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 SURF1Q15526 300 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 INTS6LQ5JSJ4 861 aaKnown RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 CYP4A22Q5TCH4 519 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 IQCEQ6IPM2 695 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 TMEM150AQ86TG1 271 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 METTL23Q86XA0 190 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 ADGRF2Q8IZF7 708 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 THEM5Q8N1Q8 247 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 LEMD2Q8NC56 503 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 FLCNQ8NFG4 579 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 PARD3BQ8TEW8 1205 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 ELSPBP1Q96BH3 223 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 ELMO3Q96BJ8 720 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 LRRC3BQ96PB8 259 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 SEPT5Q99719 369 aaPredicted RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 ACBD6Q9BR61 282 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 DDX23Q9BUQ8 820 aaKnown RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 TBC1D17Q9HA65 648 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 ARHGEF3Q9NR81 526 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 DLGAP2Q9P1A6 1054 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 CGNQ9P2M7 1197 aaKnown RBP13.05□□□□□ -0.32
LIG1-217ENST00000599165 FBXL21Q9UKT6 434 aa13.05□□□□□ -0.32
LIG1-217ENST00000599165 MYBPHLA2RUH7 354 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 LRRIQ3A6PVS8 624 aaPredicted RBP13.04□□□□□ -0.32
LIG1-217ENST00000599165 PDXKO00764 312 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 EXOC3O60645 756 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 HUS1O60921 280 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 VNN1O95497 513 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 TNNC2P02585 160 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 VIPR2P41587 438 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 PLD1Q13393 1074 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 BECN1Q14457 450 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 MGAT5BQ3V5L5 792 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 ZCWPW2Q504Y3 356 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 SDHAF4Q5VUM1 108 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 TDRD10Q5VZ19 366 aaKnown RBP13.04□□□□□ -0.32
LIG1-217ENST00000599165 FAM171BQ6P995 826 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 VITQ6UXI7 678 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 TMEM86AQ8N2M4 240 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 ELMOD1Q8N336 334 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 SPATA18Q8TC71 538 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 SPPL2BQ8TCT7 592 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 GIPC2Q8TF65 315 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 C2orf15Q8WU43 125 aaKnown RBP13.04□□□□□ -0.32
LIG1-217ENST00000599165 SMARCD2Q92925 531 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 MRPL45Q9BRJ2 306 aaKnown RBP13.04□□□□□ -0.32
LIG1-217ENST00000599165 PI4K2AQ9BTU6 479 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 TRPV4Q9HBA0 871 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 CRTAC1Q9NQ79 661 aa13.04□□□□□ -0.32
LIG1-217ENST00000599165 ABI2Q9NYB9 513 aaPredicted RBP13.04□□□□□ -0.32
LIG1-217ENST00000599165 GTF3C4Q9UKN8 822 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms