RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CD19P15391 556 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 TNFAIP3P21580 790 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 TKTP29401 623 aaKnown RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 EIF4A3P38919 411 aaKnown RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 PBX3P40426 434 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 USP41Q3LFD5 358 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 SGO2Q562F6 1265 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 ZNF571Q7Z3V5 609 aaPredicted RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 NOP9Q86U38 636 aaKnown RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 TMEM173Q86WV6 379 aaPredicted RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 GPIHBP1Q8IV16 184 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 BCL7CQ8WUZ0 217 aaPredicted RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 ZNF606Q8WXB4 792 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 DDX1Q92499 740 aaKnown RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 HEXIM2Q96MH2 286 aaKnown RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 SYT11Q9BT88 431 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 TTPALQ9BTX7 342 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 HERC2P3Q9BVR0 1158 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 PLVAPQ9BX97 442 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 HMGXB4Q9UGU5 601 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 PUF60Q9UHX1 559 aaKnown RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 PCDHA11Q9Y5I1 949 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 TIMM13Q9Y5L4 95 aaPredicted RBP11.43□□□□□ -0.58
SS18-213ENST00000579640 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 SOWAHDA6NJG2 315 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 THAP12O43422 761 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 IPO7O95373 1038 aaKnown RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 SOD2P04179 222 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 PLEKP08567 350 aaPredicted RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 PDGFRBP09619 1106 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 LINC00271P0C7V0 271 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 LMO2P25791 158 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 KIF11P52732 1056 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 PLCB3Q01970 1234 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 KRT17Q04695 432 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 MRPL58Q14197 206 aaKnown RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 ASTE1Q2TB18 679 aaPredicted RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 VARS2Q5ST30 1063 aaKnown RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 ARHGAP17Q68EM7 881 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 ZNF280DQ6N043 979 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 TRIM72Q6ZMU5 477 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 ANKS3Q6ZW76 656 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 DDX53Q86TM3 631 aaKnown RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 ACOT1Q86TX2 421 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 GPR65Q8IYL9 337 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 B3GALNT2Q8NCR0 500 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 ZNF830Q96NB3 372 aaPredicted RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 SAMD11Q96NU1 681 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 SYT15Q9BQS2 421 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.42□□□□□ -0.58
SS18-213ENST00000579640 ACP6Q9NPH0 428 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 PCDHGC3Q9UN70 934 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 NME7Q9Y5B8 376 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 EPN1Q9Y6I3 576 aaPredicted RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 LINC01553A4QN01 128 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 OR6C75A6NL08 312 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 EIF3CLB5ME19 914 aaKnown RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 NDUFA10O95299 355 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 RB1P06400 928 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 PTPN1P18031 435 aaKnown RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 BMPR1AP36894 532 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 TSPY1Q01534 308 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 FMO1Q01740 532 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 MAPRE1Q15691 268 aaKnown RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 RAB30Q15771 203 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 CNGA2Q16280 664 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 SLC18A3Q16572 532 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 INTS6LQ5JSJ4 861 aaKnown RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 PPP1R2P3Q6NXS1 205 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 RAD9BQ6WBX8 426 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 SLC20A1Q8WUM9 679 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 EIF3CQ99613 913 aaKnown RBP11.42□□□□□ -0.58
SS18-213ENST00000579640 PDCL3Q9H2J4 239 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 CHST7Q9NS84 486 aa11.42□□□□□ -0.58
SS18-213ENST00000579640 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.42□□□□□ -0.584e-6■■■□□ 17.6
SS18-213ENST00000579640 VWA8A3KMH1 1905 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 CEP290O15078 2479 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 LCHNA4D1U4 455 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 FGF18O76093 207 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 LCA5LO95447 670 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 LSM8O95777 96 aaKnown RBP11.41□□□□□ -0.58
SS18-213ENST00000579640 MMEP08473 750 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 CHRNB2P17787 502 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 BRD2P25440 801 aaKnown RBP11.41□□□□□ -0.58
SS18-213ENST00000579640 RABGGTBP53611 331 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 ORC1Q13415 861 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 SPA17Q15506 151 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 C10orf76Q5T2E6 689 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 TAF3Q5VWG9 929 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 KIAA1841Q6NSI8 718 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 LCLAT1Q6UWP7 414 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 CEP57Q86XR8 500 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 DCP1BQ8IZD4 617 aaKnown RBP11.41□□□□□ -0.58
SS18-213ENST00000579640 SLC30A5Q8TAD4 765 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 PIK3R5Q8WYR1 880 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 TFAP2BQ92481 460 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 RTP3Q9BQQ7 232 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 DPEP3Q9H4B8 488 aa11.41□□□□□ -0.58
SS18-213ENST00000579640 LUC7LQ9NQ29 371 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms