RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	ZC3H7B	Q9UGR2	993 aa	Known RBP	11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	MEI4	A8MW99	385 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	TPBGL	P0DKB5	382 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	BMPR2	Q13873	1038 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	DNAL1	Q4LDG9	190 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	SLC45A4	Q5BKX6	768 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	EMC10	Q5UCC4	262 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	MCF2L2	Q86YR7	1114 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	CCNJL	Q8IV13	435 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	DCLK2	Q8N568	766 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	ETNPPL	Q8TBG4	499 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	RMDN3	Q96TC7	470 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	ADAMTSL3	P82987	1691 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	KIF1A	Q12756	1690 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	USP54	Q70EL1	1684 aa		11.96	□□□□□ -0.49
CLN3-238	ENST00000569430	DISP2	A7MBM2	1401 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	P4HA2	O15460	535 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	TNNC2	P02585	160 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	CALB1	P05937	261 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	SRGAP2C	P0DJJ0	459 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	MX2	P20592	715 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	GCLC	P48506	637 aa	Predicted RBP	11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	TPD52	P55327	224 aa	Predicted RBP	11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	SWSAP1	Q6NVH7	229 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	ENOSF1	Q7L5Y1	443 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	MCOLN2	Q8IZK6	566 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	SPATA18	Q8TC71	538 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	ACTL9	Q8TC94	416 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	LRMDA	Q9H2I8	198 aa		11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	RAVER2	Q9HCJ3	691 aa	Known RBP	11.96	□□□□□ -0.5
CLN3-238	ENST00000569430	EDF1	O60869	148 aa	Known RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	STK10	O94804	968 aa	Known RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	KRT3	P12035	628 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	JAM2	P57087	298 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	PDK4	Q16654	411 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	IYD	Q6PHW0	289 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	DSTYK	Q6XUX3	929 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	C1orf186	Q6ZWK4	172 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	TRABD2A	Q86V40	505 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	MIS12	Q9H081	205 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	ARL8B	Q9NVJ2	186 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	DDX18	Q9NVP1	670 aa	Known RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	AGO2	Q9UKV8	859 aa	Known RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	UBE4B	O95155	1302 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	FAM237B	A0A1B0GVD1	139 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	MEIS2	O14770	477 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	AIM2	O14862	343 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	TCN1	P20061	433 aa	Predicted RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	FMO1	Q01740	532 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	OTUD4	Q01804	1114 aa	Known RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	MPP2	Q14168	576 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	FASTKD3	Q14CZ7	662 aa	Known RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	CC2D2B	Q6DHV5	1058 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	OTOP1	Q7RTM1	612 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	PYDC1	Q8WXC3	89 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	KLC2	Q9H0B6	622 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	KCNH7	Q9NS40	1196 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430		E7ENQ6	273 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	NEMP1	O14524	444 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	DNALI1	O14645	258 aa	Predicted RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	SP100	P23497	879 aa	Predicted RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	SHMT1	P34896	483 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	RFC1	P35251	1148 aa	Predicted RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	WDR4	P57081	412 aa	Known RBP	11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	CLEC16A	Q2KHT3	1053 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	PARP6	Q2NL67	630 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	RFWD3	Q6PCD5	774 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	ZSWIM2	Q8NEG5	633 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	NYAP2	Q9P242	653 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	ZHX2	Q9Y6X8	837 aa		11.95	□□□□□ -0.5
CLN3-238	ENST00000569430	INO80B-WBP1	J3KQ70	363 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	FSCN2	O14926	492 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	KCNN4	O15554	427 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	DGKI	O75912	1065 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	PDE5A	O76074	875 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	KRT7	P08729	469 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	ECE1	P42892	770 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	ROR1	Q01973	937 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	SHROOM1	Q2M3G4	852 aa	Predicted RBP	11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	CLNK	Q7Z7G1	428 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	PPIL6	Q8IXY8	311 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	RFWD2	Q8NHY2	731 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	INO80B	Q9C086	356 aa	Predicted RBP	11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	TJP1	Q07157	1748 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	GTF2H1	P32780	548 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	SKIV2L2	P42285	1042 aa	Known RBP	11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	PSMC5	P62195	406 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	ZCCHC23	Q6ZST2	131 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	CCDC33	Q8N5R6	958 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	DNAAF3	Q8N9W5	541 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	CLIC5	Q9NZA1	410 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	USP21	Q9UK80	565 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	INPP5F	Q9Y2H2	1132 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	SLIT2	O94813	1529 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430		H0YCG3	227 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	GRAP2	O75791	330 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	RAD17	O75943	681 aa		11.94	□□□□□ -0.5
CLN3-238	ENST00000569430	SNRPA	P09012	282 aa	Known RBP	11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms