RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ARPC4-TTLL3A0A0A6YYG9 625 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 ESYT2A0FGR8 921 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 CCDC169A6NNP5 214 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 KCNJ18B7U540 433 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 ARHGAP33O14559 1287 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 PPEF1O14829 653 aaPredicted RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 FTCDO95954 541 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 PLCG1P19174 1290 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 SLC5A2P31639 672 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 KCNJ12Q14500 433 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 TIGD2Q4W5G0 525 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 NEK5Q6P3R8 708 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 RHOT2Q8IXI1 618 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 SLC7A6OSQ96CW6 309 aaPredicted RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 MED30Q96HR3 178 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 MRPL1Q9BYD6 325 aaKnown RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 DDX43Q9NXZ2 648 aaKnown RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 HMGXB4Q9UGU5 601 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 DBR1Q9UK59 544 aaKnown RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 SLC30A1Q9Y6M5 507 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 FRMPD2Q68DX3 1309 aaPredicted RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 MYH10P35580 1976 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 SMCO2A6NFE2 343 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 GMNNO75496 209 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 MLLT3P42568 568 aaPredicted RBP11.37□□□□□ -0.59
CLK3-226ENST00000569406 SH3BP5LQ7L8J4 393 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 TMC3Q7Z5M5 1100 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 KIAA0895Q8NCT3 520 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 PNMA5Q96PV4 448 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 TGS1Q96RS0 853 aaKnown RBP11.37□□□□□ -0.59
CLK3-226ENST00000569406 TBCBQ99426 244 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 TRIM9Q9C026 710 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 AGPAT5Q9NUQ2 364 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 UCKL1Q9NWZ5 548 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 UVRAGQ9P2Y5 699 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 EIF3BP55884 814 aaKnown RBP11.37□□□□□ -0.59
CLK3-226ENST00000569406 SPAG1Q07617 926 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 IL23RQ5VWK5 629 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 CDC42EP5Q6NZY7 148 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 DTHD1Q6ZMT9 781 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 PEX26Q7Z412 305 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 CENPSQ8N2Z9 138 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 HPS1Q92902 700 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 CCSER2Q9H7U1 834 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 FAM207AQ9NSI2 230 aaPredicted RBP11.37□□□□□ -0.59
CLK3-226ENST00000569406 KLF15Q9UIH9 416 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 POU2F3Q9UKI9 436 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 RBBP6Q7Z6E9 1792 aaKnown RBP11.37□□□□□ -0.59
CLK3-226ENST00000569406 PSMA7O14818 248 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 ASIC1P78348 528 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 EHHADHQ08426 723 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 CDC16Q13042 620 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 GRB10Q13322 594 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 SMU1Q2TAY7 513 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 DENND2CQ68D51 928 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 TTBK2Q6IQ55 1244 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 ACAD11Q709F0 780 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 KCNK18Q7Z418 384 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 LRRC47Q8N1G4 583 aaKnown RBP11.37□□□□□ -0.59
CLK3-226ENST00000569406 DEPDC4Q8N2C3 294 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 TBCKQ8TEA7 893 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 AP1M1Q9BXS5 423 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 MTMR12Q9C0I1 747 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 SH2D4AQ9H788 454 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 JMJD4Q9H9V9 463 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 NDE1Q9NXR1 346 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 MTRF1LQ9UGC7 380 aaKnown RBP11.37□□□□□ -0.59
CLK3-226ENST00000569406 ATPIF1Q9UII2 106 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 DNAJC16Q9Y2G8 782 aa11.37□□□□□ -0.59
CLK3-226ENST00000569406 PSME4Q14997 1843 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 DDX3XO00571 662 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLK3-226ENST00000569406 RIMBP2O15034 1052 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 USP1O94782 785 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 FCER1AP12319 257 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 ECHS1P30084 290 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 STAT2P52630 851 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 KRT76Q01546 638 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 MMEL1Q495T6 779 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 CCDC58Q4VC31 144 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 MIIPQ5JXC2 388 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 OGFOD2Q6N063 350 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 TUBA3EQ6PEY2 450 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 LSMEM1Q8N8F7 131 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 ACTRT2Q8TDY3 377 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 COA7Q96BR5 231 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 EGLN2Q96KS0 407 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 PRICKLE1Q96MT3 831 aaPredicted RBP11.36□□□□□ -0.59
CLK3-226ENST00000569406 PITPNM3Q9BZ71 974 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 NT5C3AQ9H0P0 336 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.36□□□□□ -0.59
CLK3-226ENST00000569406 LAD1O00515 517 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 ABCB1P08183 1280 aaPredicted RBP11.36□□□□□ -0.59
CLK3-226ENST00000569406 PLEKP08567 350 aaPredicted RBP11.36□□□□□ -0.59
CLK3-226ENST00000569406 PCNAP12004 261 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 STX2P32856 288 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 PPARGP37231 505 aaPredicted RBP11.36□□□□□ -0.59
CLK3-226ENST00000569406 VCPP55072 806 aaKnown RBP11.36□□□□□ -0.59
CLK3-226ENST00000569406 MAP3K7CLP57077 242 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 JAG1P78504 1218 aa11.36□□□□□ -0.59
CLK3-226ENST00000569406 DR1Q01658 176 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms