RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 RBBP8NLQ8NC74 664 aaPredicted RBP10.21□□□□□ -0.77
LIMA1-211ENST00000552338 EPS8L1Q8TE68 723 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 BCL7CQ8WUZ0 217 aaPredicted RBP10.21□□□□□ -0.77
LIMA1-211ENST00000552338 CPLX3Q8WVH0 158 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 ZNF606Q8WXB4 792 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 ELMO3Q96BJ8 720 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 TMEM169Q96HH4 297 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 TNIP3Q96KP6 325 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 TWNKQ96RR1 684 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 MMS19Q96T76 1030 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 VN1R3Q9BXE9 311 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 ELOVL4Q9GZR5 314 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 DNAI2Q9GZS0 605 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 LHX5Q9H2C1 402 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 RXFP1Q9HBX9 757 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 FNIP2Q9P278 1114 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 ARHGAP20Q9P2F6 1191 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 HSFX1Q9UBD0 423 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 NOCTQ9UK39 431 aaKnown RBP10.21□□□□□ -0.77
LIMA1-211ENST00000552338 SSX2IPQ9Y2D8 614 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 PCDHB4Q9Y5E5 795 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 ATG2AQ2TAZ0 1938 aa10.21□□□□□ -0.78
LIMA1-211ENST00000552338 GREB1Q4ZG55 1949 aa10.21□□□□□ -0.78
LIMA1-211ENST00000552338 LCHNA4D1U4 455 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 OR6C75A6NL08 312 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 NT5C1B-RDH14C9J2C7 533 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 H7C4K7 107 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 CYP26A1O43174 497 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 FGF18O76093 207 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 CYP1A1P04798 512 aaPredicted RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 CTSAP10619 480 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 GZMAP12544 262 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 CYP11B1P15538 503 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 LMO2P25791 158 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 RPL34P49207 117 aaKnown RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 CCZ1BP86790 482 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 CCZ1P86791 482 aaPredicted RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 MLLT1Q03111 559 aaPredicted RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 KRT17Q04695 432 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 MAPRE1Q15691 268 aaKnown RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 ASIC2Q16515 512 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 LRIT3Q3SXY7 679 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 VARS2Q5ST30 1063 aaKnown RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 OVOS1Q6IE37 1185 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 PDE12Q6L8Q7 609 aaKnown RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 FAM117BQ6P1L5 589 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 LCLAT1Q6UWP7 414 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 CYP26C1Q6V0L0 522 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 SLC47A2Q86VL8 602 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 THEM5Q8N1Q8 247 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 OR6B3Q8NGW1 331 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 PATJQ8NI35 1801 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 LNX1Q8TBB1 728 aaPredicted RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 HNRNPABQ99729 332 aaKnown RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 TTPALQ9BTX7 342 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 PBX4Q9BYU1 374 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 UBXN6Q9BZV1 441 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 ZNF518BQ9C0D4 1074 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 ZCWPW1Q9H0M4 648 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 ZBP1Q9H171 429 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 ZNHIT6Q9NWK9 470 aaKnown RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 DDX43Q9NXZ2 648 aaKnown RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 MTRRQ9UBK8 725 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 MAFFQ9ULX9 164 aa10.2□□□□□ -0.78
LIMA1-211ENST00000552338 PRG3Q9Y2Y8 225 aaPredicted RBP10.2□□□□□ -0.78
LIMA1-211ENST00000552338 A8MXQ7 604 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 H3BNC9 293 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 O00370 1275 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 FSCN2O14926 492 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 ARHGAP6O43182 974 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 MED7O43513 233 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 UNGP13051 313 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 CHRNB2P17787 502 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 PTPN1P18031 435 aaKnown RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 IBSPP21815 317 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 TKTP29401 623 aaKnown RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 GNA15P30679 374 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 RAP1GAPP47736 663 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 FMO1Q01740 532 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 CDR2Q01850 454 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 TAP1Q03518 808 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 KLHL30Q0D2K2 578 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 SLC18A3Q16572 532 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 INTS6LQ5JSJ4 861 aaKnown RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 FAM171A1Q5VUB5 890 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 FAM109BQ6ICB4 259 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 PPP1R2P3Q6NXS1 205 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 TRIM72Q6ZMU5 477 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 ZNF662Q6ZS27 426 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 TAS1R1Q7RTX1 841 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 ZNF571Q7Z3V5 609 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 KLHL23Q8NBE8 558 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 B3GALNT2Q8NCR0 500 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 MYCBPAPQ8TBZ2 947 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 SPPL3Q8TCT6 385 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 STK32AQ8WU08 396 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 C2orf15Q8WU43 125 aaKnown RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 RABGGTAQ92696 567 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 FUBP3Q96I24 572 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 CEP295NLQ96MC4 621 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms