RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 SNX22Q96L94 193 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 TRIB1Q96RU8 372 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 PNKPQ96T60 521 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 PSMD1Q99460 953 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 GDF15Q99988 308 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 WDR12Q9GZL7 423 aaKnown RBP4.22□□□□□ -1.73
LSM6-205ENST00000507449 VPS11Q9H270 941 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 SMOC2Q9H3U7 446 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 A1CFQ9NQ94 594 aaKnown RBP4.22□□□□□ -1.73
LSM6-205ENST00000507449 TRMT13Q9NUP7 481 aaKnown RBP4.22□□□□□ -1.73
LSM6-205ENST00000507449 RGS17Q9UGC6 210 aaPredicted RBP4.22□□□□□ -1.73
LSM6-205ENST00000507449 CDC23Q9UJX2 597 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 TMX2Q9Y320 296 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 PCDHGB2Q9Y5G2 931 aa4.22□□□□□ -1.73
LSM6-205ENST00000507449 A0A087WZ62 844 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 TRIM24O15164 1050 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 RPS6KA4O75676 772 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 TXNP10599 105 aaKnown RBP4.21□□□□□ -1.74
LSM6-205ENST00000507449 NR4A1P22736 598 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 ACRV1P26436 265 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 KLRC1P26715 233 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 VIPR2P41587 438 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 TRAPPC10P48553 1259 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 SELENOPP49908 381 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 ZNF134P52741 427 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 STK3Q13188 491 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 CRHR2Q13324 411 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 PUM1Q14671 1186 aaKnown RBP eCLIP4.21□□□□□ -1.74
LSM6-205ENST00000507449 CDSNQ15517 529 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 ZIK1Q3SY52 487 aaPredicted RBP4.21□□□□□ -1.74
LSM6-205ENST00000507449 LONRF3Q496Y0 759 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 C1orf228Q6PIY5 440 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.21□□□□□ -1.74
LSM6-205ENST00000507449 SLC30A10Q6XR72 485 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 MAPKAPK5Q8IW41 473 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 SMC5Q8IY18 1101 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 POF1BQ8WVV4 589 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 BRI3BPQ8WY22 251 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 NACC2Q96BF6 587 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 LOXL4Q96JB6 756 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 SLC46A1Q96NT5 459 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 DCLRE1CQ96SD1 692 aaKnown RBP4.21□□□□□ -1.74
LSM6-205ENST00000507449 MESP1Q9BRJ9 268 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 CRB3Q9BUF7 120 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 MS4A7Q9GZW8 240 aaPredicted RBP4.21□□□□□ -1.74
LSM6-205ENST00000507449 RNPEPQ9H4A4 650 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 TRPM5Q9NZQ8 1165 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 CEP72Q9P209 647 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 EIF2B4Q9UI10 523 aaKnown RBP4.21□□□□□ -1.74
LSM6-205ENST00000507449 SORCS3Q9UPU3 1222 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 ATP11BQ9Y2G3 1177 aa4.21□□□□□ -1.74
LSM6-205ENST00000507449 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 CCDC195A0A1B0GUA6 201 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 DIRC3C9JPN6 131 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 EIF3JO75822 258 aaKnown RBP4.2□□□□□ -1.74
LSM6-205ENST00000507449 SCAF4O95104 1147 aaKnown RBP4.2□□□□□ -1.74
LSM6-205ENST00000507449 CFIP05156 583 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 ANXA2P07355 339 aaKnown RBP4.2□□□□□ -1.74
LSM6-205ENST00000507449 KCNA2P16389 499 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 HSPA7P48741 367 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 CARSP49589 748 aaKnown RBP4.2□□□□□ -1.74
LSM6-205ENST00000507449 WNT3P56703 355 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 SLC25A3Q00325 362 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 PIGFQ07326 219 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 ZNF844Q08AG5 666 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 CHAF1AQ13111 956 aaPredicted RBP4.2□□□□□ -1.74
LSM6-205ENST00000507449 CNGB1Q14028 1251 aaPredicted RBP4.2□□□□□ -1.74
LSM6-205ENST00000507449 MPEG1Q2M385 716 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 HS1BP3Q53T59 392 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 RABL3Q5HYI8 236 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 GAS2L3Q86XJ1 694 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 ZNF280BQ86YH2 543 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 TMPRSS6Q8IU80 811 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 TTC9BQ8N6N2 239 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 ACRBPQ8NEB7 543 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 IL17DQ8TAD2 202 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 CPT1CQ8TCG5 803 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 RAPGEF4Q8WZA2 1011 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 SPSB4Q96A44 273 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 C18orf8Q96DM3 657 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 IQCDQ96DY2 449 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 C8orf49Q96NF6 230 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 GPR20Q99678 358 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 SMOQ99835 787 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 STK31Q9BXU1 1019 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 TTYH3Q9C0H2 523 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 REXO4Q9GZR2 422 aaKnown RBP4.2□□□□□ -1.74
LSM6-205ENST00000507449 KLC2Q9H0B6 622 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 SIK2Q9H0K1 926 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 DEF6Q9H4E7 631 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 MID2Q9UJV3 735 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 MAP3K2Q9Y2U5 619 aa4.2□□□□□ -1.74
LSM6-205ENST00000507449 CLCA1A8K7I4 914 aa4.19□□□□□ -1.74
LSM6-205ENST00000507449 F5H423 210 aaPredicted RBP4.19□□□□□ -1.74
LSM6-205ENST00000507449 K7ESM1 405 aa4.19□□□□□ -1.74
LSM6-205ENST00000507449 FAM20BO75063 409 aa4.19□□□□□ -1.74
LSM6-205ENST00000507449 NCR1O76036 304 aa4.19□□□□□ -1.74
LSM6-205ENST00000507449 GPANK1O95872 356 aa4.19□□□□□ -1.74
LSM6-205ENST00000507449 SPATA31D3P0C874 917 aa4.19□□□□□ -1.74
LSM6-205ENST00000507449 INSRRP14616 1297 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms