RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 RHOT1Q8IXI2 618 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 EXOC4Q96A65 974 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 MAGOHBQ96A72 148 aaKnown RBP11.96□□□□□ -0.49
LIG3-204ENST00000585740 CPB2Q96IY4 423 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 BTBD6Q96KE9 485 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 APBA2Q99767 749 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 MIS12Q9H081 205 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 ADAMTS10Q9H324 1103 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 HOMER3Q9NSC5 361 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 PSD3Q9NYI0 1048 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 WDR35Q9P2L0 1181 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 PARP2Q9UGN5 583 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 AMACRQ9UHK6 382 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 SIX4Q9UIU6 781 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 KIAA1257Q9ULG3 409 aa11.96□□□□□ -0.49
LIG3-204ENST00000585740 TRIP11Q15643 1979 aa11.96□□□□□ -0.5
LIG3-204ENST00000585740 HAS3O00219 553 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 FSCN2O14926 492 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 TLR3O15455 904 aaKnown RBP11.95□□□□□ -0.5
LIG3-204ENST00000585740 TTI1O43156 1089 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 ITGB3P05106 788 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 PYGMP11217 842 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 VDRP11473 427 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 BRD2P25440 801 aaKnown RBP11.95□□□□□ -0.5
LIG3-204ENST00000585740 MARCKSL1P49006 195 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 YARSP54577 528 aaKnown RBP11.95□□□□□ -0.5
LIG3-204ENST00000585740 GSCP56915 257 aaPredicted RBP11.95□□□□□ -0.5
LIG3-204ENST00000585740 STILQ15468 1287 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 LRRC38Q5VT99 294 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 SCARA5Q6ZMJ2 495 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 SYDE1Q6ZW31 735 aaPredicted RBP11.95□□□□□ -0.5
LIG3-204ENST00000585740 CATSPER4Q7RTX7 472 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 ERICH1Q86X53 443 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 IFNL1Q8IU54 200 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 TMEM192Q8IY95 271 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 NME8Q8N427 588 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 PRELID2Q8N945 189 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 ERP44Q9BS26 406 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 DNAI2Q9GZS0 605 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 ST7Q9NRC1 585 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 SETD4Q9NVD3 440 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 DPP3Q9NY33 737 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 VPS18Q9P253 973 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 NXF1Q9UBU9 619 aaKnown RBP11.95□□□□□ -0.5
LIG3-204ENST00000585740 FEZ2Q9UHY8 353 aaPredicted RBP11.95□□□□□ -0.5
LIG3-204ENST00000585740 POLIQ9UNA4 740 aa11.95□□□□□ -0.5
LIG3-204ENST00000585740 ESYT3A0FGR9 886 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 FAM170AA1A519 330 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 ZSCAN5CA6NGD5 496 aaPredicted RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 XPOTO43592 962 aaKnown RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 FKTNO75072 461 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 GPR32O75388 356 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 SYF2O95926 243 aaKnown RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 WEE2P0C1S8 567 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 DARSP14868 501 aaKnown RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 CD19P15391 556 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 COILP38432 576 aaPredicted RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 GGCXP38435 758 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 PTPN11Q06124 597 aaPredicted RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 MYO1EQ12965 1108 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 PIGHQ14442 188 aaPredicted RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 WDR72Q3MJ13 1102 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 DUPD1Q68J44 220 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 LRIG3Q6UXM1 1119 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 JAMLQ86YT9 394 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 KATNAL2Q8IYT4 538 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 C3orf20Q8ND61 904 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 C1orf131Q8NDD1 294 aaKnown RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 BEST2Q8NFU1 509 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 EXD1Q8NHP7 514 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 GRK7Q8WTQ7 553 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 KAT2BQ92831 832 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 KIF12Q96FN5 646 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 HPDLQ96IR7 371 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 GDAP1L1Q96MZ0 367 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 PPP1R16BQ96T49 567 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 SH3GL2Q99962 352 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 LRRC19Q9H756 370 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 CHORDC1Q9UHD1 332 aaPredicted RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 AGAP1Q9UPQ3 857 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 FAN1Q9Y2M0 1017 aa11.94□□□□□ -0.5
LIG3-204ENST00000585740 TRIP12Q14669 1992 aaPredicted RBP11.94□□□□□ -0.5
LIG3-204ENST00000585740 C17orf102A2RUQ5 167 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 TMEM191CA6NGB0 347 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 AGPSO00116 658 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 TNPO2O14787 897 aaKnown RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 DAPK3O43293 454 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 ADCY6O43306 1168 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 RNF40O75150 1001 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 CILPO75339 1184 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 NPTXRO95502 500 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 RPLP2P05387 115 aaKnown RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 MYL3P08590 195 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 CFHP08603 1231 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 AKR1A1P14550 325 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 ATF7P17544 494 aaPredicted RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 CYP2B6P20813 491 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 PTGIRP43119 386 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 TM4SF4P48230 202 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 RAD23BP54727 409 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms