RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 UVSSAQ2YD98 709 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 KLHDC7AQ5VTJ3 777 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 PLPP4Q5VZY2 271 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 PDE12Q6L8Q7 609 aaKnown RBP13.1□□□□□ -0.31
SHMT2-209ENST00000553949 ZNF280DQ6N043 979 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 DPY19L2P1Q6NXN4 242 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 SARM1Q6SZW1 724 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 RRAGAQ7L523 313 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 OSTM1Q86WC4 334 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 ARHGEF19Q8IW93 802 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 PPM1KQ8N3J5 372 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 MRPL43Q8N983 215 aaKnown RBP13.1□□□□□ -0.31
SHMT2-209ENST00000553949 PCMTD1Q96MG8 357 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-209ENST00000553949 FAM161BQ96MY7 647 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 ARID3AQ99856 593 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 XPO4Q9C0E2 1151 aaKnown RBP13.1□□□□□ -0.31
SHMT2-209ENST00000553949 UBE2TQ9NPD8 197 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-209ENST00000553949 DDX43Q9NXZ2 648 aaKnown RBP13.1□□□□□ -0.31
SHMT2-209ENST00000553949 PCDHGC5Q9Y5F6 944 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 BACE2Q9Y5Z0 518 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 IRAK3Q9Y616 596 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 SCN1AP35498 2009 aa13.1□□□□□ -0.31
SHMT2-209ENST00000553949 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-209ENST00000553949 A0A1W2PQC6 194 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 C2orf71A6NGG8 1288 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 HIDE1A8MVS5 230 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 H7C4K7 107 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 CBFA2T2O43439 604 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 TBC1D4O60343 1298 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 TPM3P06753 285 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 CA8P35219 290 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 GNL1P36915 607 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-209ENST00000553949 LHX1P48742 406 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 CREMQ03060 361 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 CTXN3Q4LDR2 81 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 GJB7Q6PEY0 223 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 NLRC5Q86WI3 1866 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 THEM5Q8N1Q8 247 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 OR6B3Q8NGW1 331 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 KAT5Q92993 513 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 MRPL38Q96DV4 380 aaKnown RBP13.09□□□□□ -0.31
SHMT2-209ENST00000553949 FAM81BQ96LP2 452 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 KREMEN1Q96MU8 473 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 RTP3Q9BQQ7 232 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 SNX25Q9H3E2 840 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 RXFP1Q9HBX9 757 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 PLCB1Q9NQ66 1216 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.09□□□□□ -0.31
SHMT2-209ENST00000553949 FAM207AQ9NSI2 230 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-209ENST00000553949 MTRRQ9UBK8 725 aa13.09□□□□□ -0.31
SHMT2-209ENST00000553949 OR6C75A6NL08 312 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 AP5Z1O43299 807 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 HCRTO43612 131 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 CNPP09543 421 aaKnown RBP13.08□□□□□ -0.32
SHMT2-209ENST00000553949 RPL17P18621 184 aaKnown RBP13.08□□□□□ -0.32
SHMT2-209ENST00000553949 CD58P19256 250 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 LMO2P25791 158 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 FXR1P51114 621 aaKnown RBP eCLIP13.08□□□□□ -0.32
SHMT2-209ENST00000553949 INCA1Q0VD86 236 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 IQCEQ6IPM2 695 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 RSPO2Q6UXX9 243 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-209ENST00000553949 Q7L0L9 218 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 ENOSF1Q7L5Y1 443 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 TTC39CQ8N584 583 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 OR10T2Q8NGX3 314 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 EMILIN2Q9BXX0 1053 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 OXCT2Q9BYC2 517 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-209ENST00000553949 FAM124BQ9H5Z6 455 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-209ENST00000553949 CISHQ9NSE2 258 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 LMCD1Q9NZU5 365 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 FNIP2Q9P278 1114 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 FBXL5Q9UKA1 691 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 DNAJC12Q9UKB3 198 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 AJAP1Q9UKB5 411 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-209ENST00000553949 BARX2Q9UMQ3 279 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-209ENST00000553949 STXBP5LQ9Y2K9 1186 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 NME7Q9Y5B8 376 aa13.08□□□□□ -0.32
SHMT2-209ENST00000553949 A8MXQ7 604 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 EPHB6O15197 1021 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 TEX28O15482 410 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 ADAM12O43184 909 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 CILPO75339 1184 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 NOL4O94818 638 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 PDGFRBP09619 1106 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 UCHL3P15374 230 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 ACO1P21399 889 aaKnown RBP13.07□□□□□ -0.32
SHMT2-209ENST00000553949 RFX1P22670 979 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 ACAT1P24752 427 aaKnown RBP13.07□□□□□ -0.32
SHMT2-209ENST00000553949 PCSK1P29120 753 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 PBX1P40424 430 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 NDST1P52848 882 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 MFAP3P55082 362 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 YWHAEP62258 255 aaKnown RBP13.07□□□□□ -0.32
SHMT2-209ENST00000553949 ADGRE1Q14246 886 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 SLC8B1Q6J4K2 584 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 UNC93AQ86WB7 457 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 UBR7Q8N806 425 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 NEK11Q8NG66 645 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 JAKMIP2Q96AA8 810 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 KLHL5Q96PQ7 755 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms