RNA–Protein interactions for RNA: ENST00000530395.1

SMPD1-204, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 5

Gene SMPD1, Length 447 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-204ENST00000530395 TMC8Q8IU68 726 aa22.58■■□□□ 1.21
SMPD1-204ENST00000530395 SYCP3Q8IZU3 236 aa22.58■■□□□ 1.21
SMPD1-204ENST00000530395 OR10T2Q8NGX3 314 aa22.58■■□□□ 1.21
SMPD1-204ENST00000530395 TMEM209Q96SK2 561 aa22.58■■□□□ 1.21
SMPD1-204ENST00000530395 PYM1Q9BRP8 204 aaKnown RBP22.58■■□□□ 1.21
SMPD1-204ENST00000530395 IKZF4Q9H2S9 585 aa22.58■■□□□ 1.21
SMPD1-204ENST00000530395 TRPV5Q9NQA5 729 aa22.58■■□□□ 1.21
SMPD1-204ENST00000530395 FOXD4L1Q9NU39 408 aa22.58■■□□□ 1.21
SMPD1-204ENST00000530395 FBXO4Q9UKT5 387 aa22.58■■□□□ 1.21
SMPD1-204ENST00000530395 EP300Q09472 2414 aaPredicted RBP22.58■■□□□ 1.2
SMPD1-204ENST00000530395 F5P12259 2224 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 TULP1O00294 542 aaPredicted RBP22.57■■□□□ 1.2
SMPD1-204ENST00000530395 ZNF263O14978 683 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 LDHAP00338 332 aaKnown RBP22.57■■□□□ 1.2
SMPD1-204ENST00000530395 VIPR2P41587 438 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 RPS9P46781 194 aaKnown RBP22.57■■□□□ 1.2
SMPD1-204ENST00000530395 TUFMP49411 452 aaKnown RBP22.57■■□□□ 1.2
SMPD1-204ENST00000530395 VEPH1Q14D04 833 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 ZNF528Q3MIS6 628 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 MFSD6LQ8IWD5 586 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 YAF2Q8IY57 180 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 EFCAB13Q8IY85 973 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 FAM200AQ8TCP9 573 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 PSMG2Q969U7 264 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 CLDN23Q96B33 292 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 SEPT5Q99719 369 aaPredicted RBP22.57■■□□□ 1.2
SMPD1-204ENST00000530395 FAM213AQ9BRX8 229 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 LRRC3Q9BY71 257 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 BACH2Q9BYV9 841 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 ZCWPW1Q9H0M4 648 aa22.57■■□□□ 1.2
SMPD1-204ENST00000530395 ZNF334Q9HCZ1 680 aaPredicted RBP22.57■■□□□ 1.2
SMPD1-204ENST00000530395 GARTP22102 1010 aa22.56■■□□□ 1.2
SMPD1-204ENST00000530395 PNPLA4P41247 253 aa22.56■■□□□ 1.2
SMPD1-204ENST00000530395 KCNA1Q09470 495 aa22.56■■□□□ 1.2
SMPD1-204ENST00000530395 SMARCB1Q12824 385 aa22.56■■□□□ 1.2
SMPD1-204ENST00000530395 STK38Q15208 465 aa22.56■■□□□ 1.2
SMPD1-204ENST00000530395 ARHGAP15Q53QZ3 475 aa22.56■■□□□ 1.2
SMPD1-204ENST00000530395 DNAJB7Q7Z6W7 309 aaPredicted RBP22.56■■□□□ 1.2
SMPD1-204ENST00000530395 BRSK2Q8IWQ3 736 aa22.56■■□□□ 1.2
SMPD1-204ENST00000530395 MAML2Q8IZL2 1156 aaPredicted RBP22.56■■□□□ 1.2
SMPD1-204ENST00000530395 C2orf15Q8WU43 125 aaKnown RBP22.56■■□□□ 1.2
SMPD1-204ENST00000530395 PANK2Q9BZ23 570 aa22.56■■□□□ 1.2
SMPD1-204ENST00000530395 PANK4Q9NVE7 773 aa22.56■■□□□ 1.2
SMPD1-204ENST00000530395 FRMD3A2A2Y4 597 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 HEPACAM2A8MVW5 462 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 KPNA7A9QM74 516 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 NASPP49321 788 aaPredicted RBP22.55■■□□□ 1.2
SMPD1-204ENST00000530395 TFAMQ00059 246 aaKnown RBP22.55■■□□□ 1.2
SMPD1-204ENST00000530395 MGAT5BQ3V5L5 792 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 CCDC65Q8IXS2 484 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 TTC9BQ8N6N2 239 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 CACTINQ8WUQ7 758 aaKnown RBP22.55■■□□□ 1.2
SMPD1-204ENST00000530395 SAAL1Q96ER3 474 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 BORCS6Q96GS4 357 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 GCNAQ96QF7 691 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 ATXN3LQ9H3M9 355 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 TMEM206Q9H813 350 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 RBAKQ9NYW8 714 aaPredicted RBP22.55■■□□□ 1.2
SMPD1-204ENST00000530395 PIAS3Q9Y6X2 628 aa22.55■■□□□ 1.2
SMPD1-204ENST00000530395 KINO60870 393 aaKnown RBP22.54■■□□□ 1.2
SMPD1-204ENST00000530395 SOAT2O75908 522 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 GABRR2P28476 465 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 CASP5P51878 434 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 TAF12Q16514 161 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 WSCD1Q658N2 575 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 STXBP4Q6ZWJ1 553 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 DCP1BQ8IZD4 617 aaKnown RBP22.54■■□□□ 1.2
SMPD1-204ENST00000530395 PDILTQ8N807 584 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 SPPL2BQ8TCT7 592 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 CSGALNACT1Q8TDX6 532 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 LRRC27Q9C0I9 530 aa22.54■■□□□ 1.2
SMPD1-204ENST00000530395 NDRG2Q9UN36 371 aaKnown RBP22.54■■□□□ 1.2
SMPD1-204ENST00000530395 A0A087X0B3 334 aa22.53■■□□□ 1.2
SMPD1-204ENST00000530395 CSTF1Q05048 431 aaKnown RBP22.53■■□□□ 1.2
SMPD1-204ENST00000530395 NOC3LQ8WTT2 800 aaKnown RBP22.53■■□□□ 1.2
SMPD1-204ENST00000530395 FAM3CQ92520 227 aa22.53■■□□□ 1.2
SMPD1-204ENST00000530395 MSANTD3Q96H12 275 aa22.53■■□□□ 1.2
SMPD1-204ENST00000530395 ZNF396Q96N95 335 aaPredicted RBP22.53■■□□□ 1.2
SMPD1-204ENST00000530395 HINFPQ9BQA5 517 aa22.53■■□□□ 1.2
SMPD1-204ENST00000530395 TNMDQ9H2S6 317 aa22.53■■□□□ 1.2
SMPD1-204ENST00000530395 DPYSL4O14531 572 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 CHADO15335 359 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 EXTL3O43909 919 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 ITGB3P05106 788 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 CDC25CP30307 473 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 POLR2BP30876 1174 aaKnown RBP22.52■■□□□ 1.2
SMPD1-204ENST00000530395 TSPY1Q01534 308 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 STXBP5Q5T5C0 1151 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 GPR158Q5T848 1215 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 C1orf228Q6PIY5 440 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 GAREM2Q75VX8 874 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 ARID3BQ8IVW6 561 aaPredicted RBP22.52■■□□□ 1.2
SMPD1-204ENST00000530395 LINC00301Q8NCQ3 95 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 LPIN3Q9BQK8 851 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 IER2Q9BTL4 223 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 ABI2Q9NYB9 513 aaPredicted RBP22.52■■□□□ 1.2
SMPD1-204ENST00000530395 AGAP1Q9UPQ3 857 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 PCDHGA2Q9Y5H1 932 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 OTOGLQ3ZCN5 2332 aa22.52■■□□□ 1.2
SMPD1-204ENST00000530395 DMXL1Q9Y485 3027 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms