RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 RMDN2Q96LZ7 410 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 FAM20AQ96MK3 541 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 TGS1Q96RS0 853 aaKnown RBP10.17□□□□□ -0.78
HDAC3-205ENST00000469550 POLR3CQ9BUI4 534 aaPredicted RBP10.17□□□□□ -0.78
HDAC3-205ENST00000469550 INTS2Q9H0H0 1204 aaKnown RBP10.17□□□□□ -0.78
HDAC3-205ENST00000469550 RANBP17Q9H2T7 1088 aaKnown RBP10.17□□□□□ -0.78
HDAC3-205ENST00000469550 ETNK1Q9HBU6 452 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 VTA1Q9NP79 307 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 GPCPD1Q9NPB8 672 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 AAASQ9NRG9 546 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 DMAC2Q9NW81 257 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 TAS2R14Q9NYV8 317 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 CTTNBP2NLQ9P2B4 639 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 GGT7Q9UJ14 662 aa10.17□□□□□ -0.78
HDAC3-205ENST00000469550 ADGRA3Q8IWK6 1321 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.16□□□□□ -0.78
HDAC3-205ENST00000469550 ANKRD63C9JTQ0 380 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 CLIC2O15247 247 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 TP73O15350 636 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 PYGMP11217 842 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 GZMAP12544 262 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 BRAFP15056 766 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 MAN1A1P33908 653 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 SLC18A1P54219 525 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 MGAT5Q09328 741 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 MYBPC2Q14324 1141 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 SGSM1Q2NKQ1 1148 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 WASHC2DQ5SRD0 308 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 CGB2Q6NT52 195 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 TAPT1Q6NXT6 567 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 AADACL2Q6P093 401 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 RGS9BPQ6ZS82 235 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 TLK2Q86UE8 772 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 ECHDC2Q86YB7 292 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 RELL1Q8IUW5 271 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 LMNTD2Q8IXW0 634 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 UTP4Q969X6 686 aaKnown RBP10.16□□□□□ -0.78
HDAC3-205ENST00000469550 ANO3Q9BYT9 981 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 NKIRAS1Q9NYS0 192 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 STARD13Q9Y3M8 1113 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 ZMYM2Q9UBW7 1377 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 GBF1Q92538 1859 aa10.16□□□□□ -0.78
HDAC3-205ENST00000469550 TRAFD1O14545 582 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 FSCN2O14926 492 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 NPTXRO95502 500 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 FTLP02792 175 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 SMPD1P17405 629 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 TAC1P20366 129 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 ATP4AP20648 1035 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 ATP6V1C1P21283 382 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 COMTP21964 271 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 RWDD2BP57060 319 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 IKQ13123 557 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 MPP2Q14168 576 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 SETDB1Q15047 1291 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 FSCN1Q16658 493 aaKnown RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 AP1ARQ63HQ0 302 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 KCTD1Q719H9 257 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 PALB2Q86YC2 1186 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 SLC9A9Q8IVB4 645 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 RIBC1Q8N443 379 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 MGARPQ8TDB4 240 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 PIGOQ8TEQ8 1089 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 STK32AQ8WU08 396 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 HERVK_113Q902F9 699 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 TIFAQ96CG3 184 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 KCNK9Q9NPC2 374 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 IL23AQ9NPF7 189 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 SEL1LQ9UBV2 794 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 RBM47A0AV96 593 aaKnown RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 FOXN3O00409 490 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 P4HA2O15460 535 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 CDH16O75309 829 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 NEFHP12036 1026 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 CREB1P16220 341 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 MARCKSL1P49006 195 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 RASSF2P50749 326 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 POLGP54098 1239 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 BEX3Q00994 111 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 IL9RQ01113 521 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 NR1H3Q13133 447 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 RBBP5Q15291 538 aaKnown RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 CBWD6Q4V339 395 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 CBWD3Q5JTY5 395 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 CBWD5Q5RIA9 395 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 INTS8Q75QN2 995 aaKnown RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 APBB1IPQ7Z5R6 666 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 LMO3Q8TAP4 145 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 MAIP1Q8WWC4 291 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 CCDC77Q9BR77 488 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 DDX23Q9BUQ8 820 aaKnown RBP10.15□□□□□ -0.78
HDAC3-205ENST00000469550 PLVAPQ9BX97 442 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 OSBPL1AQ9BXW6 950 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 PITPNM3Q9BZ71 974 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 AP5M1Q9H0R1 490 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 ZNF576Q9H609 170 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 CCPG1Q9ULG6 757 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 USH1CQ9Y6N9 552 aa10.15□□□□□ -0.78
HDAC3-205ENST00000469550 SCN10AQ9Y5Y9 1956 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms