RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 K7ELQ4 463 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 CYB561D2O14569 222 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 GCNT3O95395 438 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 IDEP14735 1019 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 GJA1P17302 382 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 CD72P21854 359 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 GDI1P31150 447 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 NASPP49321 788 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 TUFMP49411 452 aaKnown RBP12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 VEPH1Q14D04 833 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 SLC39A14Q15043 492 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 SLC39A12Q504Y0 691 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 ARHGAP15Q53QZ3 475 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 CRELD2Q6UXH1 353 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 BRSK2Q8IWQ3 736 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 EFCAB13Q8IY85 973 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 MAML2Q8IZL2 1156 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 THEM5Q8N1Q8 247 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 MSANTD3Q96H12 275 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 USP28Q96RU2 1077 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 TMEM209Q96SK2 561 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 SEPT5Q99719 369 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 ZNF334Q9HCZ1 680 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 PCDHB13Q9Y5F0 798 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 PCDHGA2Q9Y5H1 932 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 PIAS3Q9Y6X2 628 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 TICRRQ7Z2Z1 1910 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 NUP210Q8TEM1 1887 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 HEPACAM2A8MVW5 462 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 ZNF263O14978 683 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 STX6O43752 255 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 KINO60870 393 aaKnown RBP12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 LDHAP00338 332 aaKnown RBP12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 GARTP22102 1010 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 CDC25CP30307 473 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 VIPR2P41587 438 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 C1orf228Q6PIY5 440 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 DNAJB7Q7Z6W7 309 aaPredicted RBP12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 MFSD6LQ8IWD5 586 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 YAF2Q8IY57 180 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 TTC9BQ8N6N2 239 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 SPPL2BQ8TCT7 592 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 GCNAQ96QF7 691 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 FAM213AQ9BRX8 229 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 IKZF4Q9H2S9 585 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 TMEM206Q9H813 350 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 PRMT8Q9NR22 394 aaPredicted RBP12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 RBAKQ9NYW8 714 aaPredicted RBP12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 TBC1D7Q9P0N9 293 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 SLC27A5Q9Y2P5 690 aa12.47□□□□□ -0.41
SQSTM1-203ENST00000422245 NCANO14594 1321 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 SHISA7A6NL88 538 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 KPNA7A9QM74 516 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 ARNTLO00327 626 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 KIAA0391O15091 583 aaKnown RBP12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 SOAT2O75908 522 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 CASP5P51878 434 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 MLLT6P55198 1093 aaPredicted RBP12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 TFAMQ00059 246 aaKnown RBP12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 FOXK2Q01167 660 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 CSTF1Q05048 431 aaKnown RBP12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 KCNA1Q09470 495 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 FCHO2Q0JRZ9 810 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 STK38Q15208 465 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 MGAT5BQ3V5L5 792 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 WSCD1Q658N2 575 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 STXBP4Q6ZWJ1 553 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 GAREM2Q75VX8 874 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 CCDC65Q8IXS2 484 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 DCP1BQ8IZD4 617 aaKnown RBP12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 SYCP3Q8IZU3 236 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 LRRC52Q8N7C0 313 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 FAM200AQ8TCP9 573 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 FAM3CQ92520 227 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 SAAL1Q96ER3 474 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 BACH2Q9BYV9 841 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 LRRC27Q9C0I9 530 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 TNMDQ9H2S6 317 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 CHRDQ9H2X0 955 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 ATXN3LQ9H3M9 355 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 PANK4Q9NVE7 773 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 OBP2AQ9NY56 170 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 ZMYM5Q9UJ78 669 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 ITGA11Q9UKX5 1188 aa12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 NDRG2Q9UN36 371 aaKnown RBP12.46□□□□□ -0.41
SQSTM1-203ENST00000422245 A0A087X0B3 334 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 DPYSL4O14531 572 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 CHADO15335 359 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 EXTL3O43909 919 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 ATF6P18850 670 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 GABRR2P28476 465 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 WEE1P30291 646 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 POLR2BP30876 1174 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 TSPY1Q01534 308 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 FZD5Q13467 585 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 TAF12Q16514 161 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 STXBP5Q5T5C0 1151 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 GPR158Q5T848 1215 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 ARID3BQ8IVW6 561 aaPredicted RBP12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 ZNF687Q8N1G0 1237 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms