RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 C12orf29Q8N999 325 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 SMYD3Q9H7B4 428 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 MRPL47Q9HD33 250 aaKnown RBP14.16□□□□□ -0.14
VPS54-203ENST00000409558 PIH1D1Q9NWS0 290 aaKnown RBP14.16□□□□□ -0.14
VPS54-203ENST00000409558 HEY1Q9Y5J3 304 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 FDX1P10109 184 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 NAMPTP43490 491 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 PDIA2Q13087 525 aaKnown RBP14.15□□□□□ -0.14
VPS54-203ENST00000409558 MMRN1Q13201 1228 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 EFTUD2Q15029 972 aaKnown RBP eCLIP14.15□□□□□ -0.142e-6■□□□□ 10.5
VPS54-203ENST00000409558 DUOXA2Q1HG44 320 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 NPNTQ6UXI9 565 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 MON1BQ7L1V2 547 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 RFX6Q8HWS3 928 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 FBXL18Q96ME1 805 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 SENP7Q9BQF6 1050 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 MRPL4Q9BYD3 311 aaKnown RBP14.15□□□□□ -0.14
VPS54-203ENST00000409558 GPRC5DQ9NZD1 345 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 RNF181Q9P0P0 153 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 A0A087WZ62 844 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 A0A0B4J269 797 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 ADCY3O60266 1144 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 CST8O60676 142 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 HSPA6P17066 643 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 ACO1P21399 889 aaKnown RBP14.15□□□□□ -0.14
VPS54-203ENST00000409558 BSPRYQ5W0U4 402 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 FDXACB1Q9BRP7 624 aaPredicted RBP14.15□□□□□ -0.14
VPS54-203ENST00000409558 DHX33Q9H6R0 707 aaKnown RBP14.15□□□□□ -0.14
VPS54-203ENST00000409558 TRIM33Q9UPN9 1127 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 C19orf81C9J6K1 198 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 TGFB2P61812 414 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 MPP2Q14168 576 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 PPP6R3Q5H9R7 873 aaPredicted RBP14.15□□□□□ -0.14
VPS54-203ENST00000409558 FAM160B1Q5W0V3 765 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 SLFN12LQ6IEE8 588 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 CCDC89Q8N998 374 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 NLRP7Q8WX94 980 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 ART4Q93070 314 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 NGRNQ9NPE2 291 aaKnown RBP14.15□□□□□ -0.14
VPS54-203ENST00000409558 PARVAQ9NVD7 372 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 NEU2Q9Y3R4 380 aa14.15□□□□□ -0.14
VPS54-203ENST00000409558 M0QYV0 167 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 PECAM1P16284 738 aaPredicted RBP14.14□□□□□ -0.15
VPS54-203ENST00000409558 SSTR1P30872 391 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 TWNKQ96RR1 684 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 CGRRF1Q99675 332 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 ST6GALNAC4Q9H4F1 302 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 NAALADL1Q9UQQ1 740 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 FSCN2O14926 492 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 MAFGO15525 162 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 HCRTO43612 131 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 TNNC2P02585 160 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 DNAJC3Q13217 504 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 PLCB4Q15147 1175 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 ATF7IP2Q5U623 682 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 OR6B2Q6IFH4 312 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 APOBEC3FQ8IUX4 373 aaKnown RBP14.14□□□□□ -0.15
VPS54-203ENST00000409558 ANKS4BQ8N8V4 417 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 SLC17A8Q8NDX2 589 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 TIPINQ9BVW5 301 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 SNCAIPQ9Y6H5 919 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 KRT3P12035 628 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 DRD4P21917 467 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 MAP3K10Q02779 954 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 SEPT7Q16181 437 aaKnown RBP14.14□□□□□ -0.15
VPS54-203ENST00000409558 TAOK1Q7L7X3 1001 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 FAM71DQ8N9W8 422 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 KCTD6Q8NC69 237 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 TMEM35BQ8NCS4 154 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 TACO1Q9BSH4 297 aaKnown RBP14.14□□□□□ -0.15
VPS54-203ENST00000409558 MAGEA4P43358 317 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 GDF10P55107 478 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 C15orf59Q2T9L4 293 aaPredicted RBP14.14□□□□□ -0.15
VPS54-203ENST00000409558 FAM102AQ5T9C2 384 aaPredicted RBP14.14□□□□□ -0.15
VPS54-203ENST00000409558 FAM129AQ9BZQ8 928 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 ADAM7Q9H2U9 754 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 NKIRAS1Q9NYS0 192 aa14.14□□□□□ -0.15
VPS54-203ENST00000409558 PDE4DIPQ5VU43 2346 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 RSAD2Q8WXG1 361 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 RPF1Q9H9Y2 349 aaKnown RBP14.13□□□□□ -0.15
VPS54-203ENST00000409558 SLCO1B3Q9NPD5 702 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 GINM1Q9NU53 330 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 AGAP1Q9UPQ3 857 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 QSER1Q2KHR3 1735 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 TOM1L1O75674 476 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 TTC4O95801 387 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 IQCF3P0C7M6 154 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 CENPCQ03188 943 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 ZNF667Q5HYK9 610 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 ERMARDQ5T6L9 678 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 KIRREL3Q8IZU9 778 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 TGS1Q96RS0 853 aaKnown RBP14.13□□□□□ -0.15
VPS54-203ENST00000409558 MAFBQ9Y5Q3 323 aaPredicted RBP14.13□□□□□ -0.15
VPS54-203ENST00000409558 RPSAP08865 295 aaKnown RBP14.13□□□□□ -0.15
VPS54-203ENST00000409558 RPS12P25398 132 aaKnown RBP14.13□□□□□ -0.15
VPS54-203ENST00000409558 POLR2BP30876 1174 aaKnown RBP14.13□□□□□ -0.15
VPS54-203ENST00000409558 PHKA2P46019 1235 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 FNTAP49354 379 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 NUMBP49757 651 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 PTPN20Q4JDL3 420 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms