RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TRIM38O00635 465 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 DVL2O14641 736 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 APOL1O14791 398 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 PLA2G6O60733 806 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 USO1O60763 962 aaKnown RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 SOAT2O75908 522 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 HARSP12081 509 aaKnown RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 IDEP14735 1019 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 MUTP22033 750 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 AOAHP28039 575 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 ADCY8P40145 1251 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 RAB1AP62820 205 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 PTH1RQ03431 593 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 PPP2R5CQ13362 524 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 MOGSQ13724 837 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 FHL2Q14192 279 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 FAM110CQ1W6H9 321 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 DNAJC21Q5F1R6 531 aaKnown RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 MIIPQ5JXC2 388 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 CFAP58Q5T655 872 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 LIN54Q6MZP7 749 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 ESRP1Q6NXG1 681 aaKnown RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF449Q6P9G9 518 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 GALNT13Q8IUC8 556 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 CPOQ8IVL8 374 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 ARL10Q8N8L6 244 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 CALML6Q8TD86 181 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 HTRA1Q92743 480 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 C18orf8Q96DM3 657 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 TBC1D31Q96DN5 1066 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 RRP36Q96EU6 259 aaKnown RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 BAG1Q99933 345 aaPredicted RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 DPYSL5Q9BPU6 564 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 PYM1Q9BRP8 204 aaKnown RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 MRPL9Q9BYD2 267 aaKnown RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 STK33Q9BYT3 514 aa4.65□□□□□ -1.67
HMGB1-204ENST00000399489 UNKQ9C0B0 810 aaKnown RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 CHMP4BQ9H444 224 aaKnown RBP4.65□□□□□ -1.67
HMGB1-204ENST00000399489 USP19O94966 1318 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 A0A0G2JNJ9 132 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 LGALS16A8MUM7 142 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF561-AS1K7EIQ3 104 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 NPC1O15118 1278 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 HMMRO75330 724 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF202O95125 648 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 IL18RAPO95256 599 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 PARP1P09874 1014 aaKnown RBP4.64□□□□□ -1.67
HMGB1-204ENST00000399489 MYCLP12524 364 aaPredicted RBP4.64□□□□□ -1.67
HMGB1-204ENST00000399489 GYS1P13807 737 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 TGM1P22735 817 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 CTSSP25774 331 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 PTX3P26022 381 aaPredicted RBP4.64□□□□□ -1.67
HMGB1-204ENST00000399489 SERPINF1P36955 418 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF131P52739 623 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 IL13RA1P78552 427 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 IRF9Q00978 393 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 DAG1Q14118 895 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 DCTN1Q14203 1278 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF174Q15697 407 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 LSM12Q3MHD2 195 aaKnown RBP4.64□□□□□ -1.67
HMGB1-204ENST00000399489 NUGGCQ68CJ6 796 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 KRTAP5-1Q6L8H4 278 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 FSTL4Q6MZW2 842 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 SLC30A6Q6NXT4 461 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 LMBR1LQ6UX01 489 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 RTL10Q7L3V2 364 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 TEX11Q8IYF3 940 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 ARL6IP6Q8N6S5 226 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 PPM1NQ8N819 430 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 PLBD2Q8NHP8 589 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 KLHDC4Q8TBB5 520 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 FAM167BQ9BTA0 163 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 KATNAL1Q9BW62 490 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 PLA2G12BQ9BX93 195 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 PCIF1Q9H4Z3 704 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 ZMAT3Q9HA38 289 aaKnown RBP4.64□□□□□ -1.67
HMGB1-204ENST00000399489 AURKAIP1Q9NWT8 199 aaPredicted RBP4.64□□□□□ -1.67
HMGB1-204ENST00000399489 CFDP1Q9UEE9 299 aaPredicted RBP4.64□□□□□ -1.67
HMGB1-204ENST00000399489 Q9UFV3 132 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 ABCF2Q9UG63 623 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 STAP2Q9UGK3 403 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 SYNPO2Q9UMS6 1093 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 LIMCH1Q9UPQ0 1083 aa4.64□□□□□ -1.67
HMGB1-204ENST00000399489 A0A088AWK7 358 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 F8W8V4 182 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 CHL1O00533 1208 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 CYP27B1O15528 508 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 DOK2O60496 412 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 BAG2O95816 211 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 C4BPAP04003 597 aaKnown RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 EDNRBP24530 442 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 COPAP53621 1224 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 SLC16A1P53985 500 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 JAM2P57087 298 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 LACTBP83111 547 aaPredicted RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 TLE2Q04725 743 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 KLF10Q13118 480 aa4.63□□□□□ -1.67
HMGB1-204ENST00000399489 EIF4HQ15056 248 aaKnown RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 PKN2Q16513 984 aaKnown RBP4.63□□□□□ -1.67
HMGB1-204ENST00000399489 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms