RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PPP1R11O60927 126 aaPredicted RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 TMCC2O75069 709 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 ADD2P35612 726 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 TSPAN7P41732 249 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 CRKLP46109 303 aaKnown RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 TTC38Q5R3I4 469 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 BTBD8Q5XKL5 378 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 FAM214BQ7L5A3 538 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 LRRTM4Q86VH4 590 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 TSPYL5Q86VY4 417 aaPredicted RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 CILP2Q8IUL8 1156 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 DZIP1LQ8IYY4 767 aaKnown RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 GALNT15Q8N3T1 639 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 CELF5Q8N6W0 485 aaKnown RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 OR2I1PQ8NGU4 316 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 U2AF1L4Q8WU68 220 aaKnown RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 ASB15Q8WXK1 588 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 EZH1Q92800 747 aaPredicted RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 MTFMTQ96DP5 389 aaKnown RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 HEXIM2Q96MH2 286 aaKnown RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 PTPN18Q99952 460 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 FAM167BQ9BTA0 163 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 COLEC11Q9BWP8 271 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 PLEKHA5Q9HAU0 1116 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 ERVK13-1Q9NX77 482 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 TMOD3Q9NYL9 352 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 CPA4Q9UI42 421 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 SLC39A10Q9ULF5 831 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 TMEM98Q9Y2Y6 226 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 RWDD3Q9Y3V2 267 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 PCDHB1Q9Y5F3 818 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 CDY2AQ9Y6F7 541 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 NUMBLQ9Y6R0 609 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 COL3A1P02461 1466 aaPredicted RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 NPC1L1Q9UHC9 1359 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 TMEM82A0PJX8 343 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 GOLGA6L3A6NEY3 463 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 AQP12BA6NM10 295 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 FAM229AH3BQW9 127 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 MYO1FO00160 1098 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 IPO5O00410 1097 aaKnown RBP6.59□□□□□ -1.35
VPS53-219ENST00000576019 NPC1O15118 1278 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 PCDH8O95206 1070 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 PFKMP08237 780 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 GJA4P35212 333 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 RAD52P43351 418 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 SUMO3P55854 103 aaPredicted RBP6.59□□□□□ -1.35
VPS53-219ENST00000576019 PLS1Q14651 629 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 ARHGEF6Q15052 776 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 NR0B2Q15466 257 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 ST3GAL2Q16842 350 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 THEMIS2Q5TEJ8 643 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 PRR5LQ6MZQ0 368 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 KIAA1841Q6NSI8 718 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 C22orf34Q6ZV56 151 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 CREBRFQ8IUR6 639 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 HIPK4Q8NE63 616 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 OR14C36Q8NHC7 312 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 FOXRED1Q96CU9 486 aaPredicted RBP6.59□□□□□ -1.35
VPS53-219ENST00000576019 NAP1L5Q96NT1 182 aaPredicted RBP6.59□□□□□ -1.35
VPS53-219ENST00000576019 GBP4Q96PP9 640 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 ADI1Q9BV57 179 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 WASH6PQ9NQA3 447 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 LMBRD1Q9NUN5 540 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 PRSS50Q9UI38 385 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 USP18Q9UMW8 372 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 JAG2Q9Y219 1238 aa6.59□□□□□ -1.35
VPS53-219ENST00000576019 GCN1Q92616 2671 aaKnown RBP6.59□□□□□ -1.35
VPS53-219ENST00000576019 SCN7AQ01118 1682 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.58□□□□□ -1.36
VPS53-219ENST00000576019 SYT5O00445 386 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 SLC16A6O15403 523 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 ARHGAP6O43182 974 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 TIPRLO75663 272 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 RPN1P04843 607 aaKnown RBP6.58□□□□□ -1.36
VPS53-219ENST00000576019 SLURP2P0DP57 97 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 CCL5P13501 91 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 GSPT1P15170 499 aaKnown RBP6.58□□□□□ -1.36
VPS53-219ENST00000576019 NPR1P16066 1061 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 GLB1P16278 677 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 KRT20P35900 424 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 WASP42768 502 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 MCAMP43121 646 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 TUBP50607 506 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 HK3P52790 923 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 NKX6-1P78426 367 aaPredicted RBP6.58□□□□□ -1.36
VPS53-219ENST00000576019 ZBED6P86452 979 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 SLC6A3Q01959 620 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 ADCY2Q08462 1091 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 CRHR2Q13324 411 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 MUM1L1Q5H9M0 696 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 CDKAL1Q5VV42 579 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 SPATA1Q5VX52 437 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 RNF111Q6ZNA4 994 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 HEATR3Q7Z4Q2 680 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.58□□□□□ -1.36
VPS53-219ENST00000576019 TTC7BQ86TV6 843 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 TMEM52Q8NDY8 209 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 SIMC1Q8NDZ2 872 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 PLEKHO2Q8TD55 490 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms