RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SNTG2Q9NY99 539 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 ARFGEF2Q9Y6D5 1785 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 GMNCA6NCL1 334 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 ADCY3O60266 1144 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 SESN3P58005 492 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 DHX34Q14147 1143 aaKnown RBP11.79□□□□□ -0.52
PTPRF-204ENST00000412568 DCAF6Q58WW2 860 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 AADACL2Q6P093 401 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 NOP9Q86U38 636 aaKnown RBP11.79□□□□□ -0.52
PTPRF-204ENST00000412568 CREG2Q8IUH2 290 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 ATL2Q8NHH9 583 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 FEZF2Q8TBJ5 459 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 CDKL2Q92772 493 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 PHRF1Q9P1Y6 1649 aaKnown RBP11.79□□□□□ -0.52
PTPRF-204ENST00000412568 C5P01031 1676 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 TXNDC9O14530 226 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 SPAG7O75391 227 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 CRCPO75575 148 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 PPP1R37O75864 691 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 APRTP07741 180 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 TROVE2P10155 538 aaKnown RBP eCLIP11.79□□□□□ -0.52
PTPRF-204ENST00000412568 SLC8A1P32418 973 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 SEC24CP53992 1094 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 OAZ1P54368 228 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 LONRF1Q17RB8 773 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 FAXCQ5TGI0 409 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 DAB2IPQ5VWQ8 1189 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 NOTUMQ6P988 496 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 NIPA1Q7RTP0 329 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 ATXN7L3BQ96GX2 97 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 ZNF560Q96MR9 790 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 GPATCH2LQ9NWQ4 482 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 SNED1Q8TER0 1413 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 CPB1P15086 417 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 TNFSF9P41273 254 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 GCLCP48506 637 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-204ENST00000412568 ARL4CP56559 192 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 TSPY1Q01534 308 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 ARL13BQ3SXY8 428 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 NXNQ6DKJ4 435 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 THEM5Q8N1Q8 247 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 RYBPQ8N488 228 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-204ENST00000412568 BAP1Q92560 729 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 TTC17Q96AE7 1141 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 TNIP3Q96KP6 325 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 FIS1Q9Y3D6 152 aa11.79□□□□□ -0.52
PTPRF-204ENST00000412568 IGLV3-22A0A075B6J6 115 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 USP2O75604 605 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 HMBSP08397 361 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 CLK2P49760 499 aaKnown RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 ARHGEF6Q15052 776 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 GOLGA7BQ2TAP0 167 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 MEI1Q5TIA1 1274 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 NLRP14Q86W24 1093 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 MAP4K3Q8IVH8 894 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 ISCUQ9H1K1 167 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 STAP1Q9ULZ2 295 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 NID2Q14112 1375 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 KCNN4O15554 427 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 B4GALT5O43286 388 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 BRAFP15056 766 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 GNL1P36915 607 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 SESN2P58004 480 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 GRIK4Q16099 956 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 HEATR6Q6AI08 1181 aaKnown RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 RIOX2Q8IUF8 465 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 ZNF606Q8WXB4 792 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 CALR3Q96L12 384 aaKnown RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 CGRRF1Q99675 332 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 ERP44Q9BS26 406 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 PORCNQ9H237 461 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 CPSF3Q9UKF6 684 aaKnown RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 ZNF142P52746 1687 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 PHF2O75151 1096 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 CIB2O75838 187 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 RBP3P10745 1247 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 PID1Q7Z2X4 250 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 SLC13A5Q86YT5 568 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 ZSWIM2Q8NEG5 633 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 TMC2Q8TDI7 906 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 MORC4Q8TE76 937 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 ZSWIM1Q9BR11 485 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 KLC2Q9H0B6 622 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 BTBD7Q9P203 1132 aa11.78□□□□□ -0.52
PTPRF-204ENST00000412568 WRAP73Q9P2S5 460 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-204ENST00000412568 ZBBXA8MT70 800 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 HSD17B4P51659 736 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 CCDC62Q6P9F0 684 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 SDCCAG8Q86SQ7 713 aaPredicted RBP11.77□□□□□ -0.52
PTPRF-204ENST00000412568 TTC13Q8NBP0 860 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 OR5B17Q8NGF7 314 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 SPATA18Q8TC71 538 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 SNF8Q96H20 258 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 RBM15Q96T37 977 aaKnown RBP eCLIP11.77□□□□□ -0.52
PTPRF-204ENST00000412568 KLF6Q99612 283 aaPredicted RBP11.77□□□□□ -0.52
PTPRF-204ENST00000412568 CARD9Q9H257 536 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 RAB6BQ9NRW1 208 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 GGT7Q9UJ14 662 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 INTUQ9ULD6 942 aa11.77□□□□□ -0.52
PTPRF-204ENST00000412568 ACAT1P24752 427 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms