RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 SENP1Q9P0U3 644 aa12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 CCDC78A2IDD5 438 aa12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 HLA-DPA1P20036 260 aa12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 ANTXR2P58335 489 aa12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 PRAMEP78395 509 aa12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 PRPF39Q86UA1 669 aaKnown RBP12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 ZKSCAN4Q969J2 545 aaPredicted RBP12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 C2orf40Q9H1Z8 148 aa12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 NDFIP2Q9NV92 336 aa12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 PKD2L2Q9NZM6 624 aa12.56□□□□□ -0.4
PCDHA9-201ENST00000378122 SSU72P8A0A1W2PR75 194 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 AKAP10O43572 662 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 DAB1O75553 588 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 GRIN1Q05586 938 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 KDM7AQ6ZMT4 941 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 SPATA2LQ8IUW3 424 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 NSUN6Q8TEA1 469 aaKnown RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 CNBD2Q96M20 576 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 KLF6Q99612 283 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 CCSER1Q9C0I3 900 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 CHORDC1Q9UHD1 332 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 ACADMP11310 421 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 SERPINB3P29508 390 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 HSD17B3P37058 310 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 MRPS15P82914 257 aaKnown RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 ZNF200P98182 395 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 ARHGAP15Q53QZ3 475 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 CLEC4GQ6UXB4 293 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 TEKT4Q8WW24 435 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 KIF12Q96FN5 646 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 FAM84BQ96KN1 310 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 AGAP3Q96P47 875 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 SH2D3AQ9BRG2 576 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 KATNAL1Q9BW62 490 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 STAP1Q9ULZ2 295 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 CHMP2BQ9UQN3 213 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 MYO3AQ8NEV4 1616 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 CYP19A1P11511 503 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 TCN1P20061 433 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 COMTP21964 271 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 RGS2P41220 211 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 CEP55Q53EZ4 464 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 ZC2HC1CQ53FD0 456 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 LLGL2Q6P1M3 1020 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 C16orf89Q6UX73 402 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 RGL4Q8IZJ4 473 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 LZICQ8WZA0 190 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 MTBPQ96DY7 904 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 CASS4Q9NQ75 786 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 INO80Q9ULG1 1556 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 PLEKP08567 350 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 FDPSP14324 419 aaKnown RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 KCNA2P16389 499 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 RFX3P48380 749 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 INPP5AQ14642 412 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 TTC39BQ5VTQ0 682 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 ARRDC4Q8NCT1 418 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 ZNF555Q8NEP9 628 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 SCUBE2Q9NQ36 999 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 ZFATQ9P243 1243 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 A2ML1A8K2U0 1454 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 CRB1P82279 1406 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 DGKIO75912 1065 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 BTKQ06187 659 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 USP6NLQ92738 828 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 GLIS2Q9BZE0 524 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 SKAP2O75563 359 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 EPHA7Q15375 998 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 BARGINQ6ZT62 677 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 ASPSCR1Q9BZE9 553 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 ADARB2Q9NS39 739 aaKnown RBP12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 BFARQ9NZS9 450 aa12.55□□□□□ -0.4
PCDHA9-201ENST00000378122 RNF17Q9BXT8 1623 aaKnown RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 PXDNLA1KZ92 1463 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 CPA2P48052 419 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 CTCFP49711 727 aaPredicted RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ACOT2P49753 483 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ERVK-24P63145 666 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ZC3H12BQ5HYM0 836 aaKnown RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 NBPF15Q8N660 670 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 OR6P1Q8NGX9 317 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ZFYVE19Q96K21 471 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 RHBDL2Q9NX52 303 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 MAD2L2Q9UI95 211 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 LRRIQ3A6PVS8 624 aaPredicted RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 APRTP07741 180 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 MAGEA4P43358 317 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 SERPINB10P48595 397 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 RGS7P49802 495 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 PTK2BQ14289 1009 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ANKRD13AQ8IZ07 590 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 HNRNPLLQ8WVV9 542 aaKnown RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ARHGEF26Q96DR7 871 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ZNF512Q96ME7 567 aaPredicted RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 VCPKMTQ9H867 229 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ZC3H7BQ9UGR2 993 aaKnown RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 F8W8V4 182 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 AIM2O14862 343 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 XPO1O14980 1071 aaKnown RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ANGPT2O15123 496 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms