RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PHKBQ93100 1093 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 MARS2Q96GW9 593 aaKnown RBP4.16□□□□□ -1.74
HMGB1-201ENST00000326004 P2RX7Q99572 595 aaKnown RBP4.16□□□□□ -1.74
HMGB1-201ENST00000326004 SMOQ99835 787 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF287Q9HBT7 754 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 RNF181Q9P0P0 153 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 SRRDQ9UH36 339 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 OGDHLQ9ULD0 1010 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.16□□□□□ -1.74
HMGB1-201ENST00000326004 FPGT-TNNI3KV9GXZ4 949 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 USP19O94966 1318 aa4.16□□□□□ -1.74
HMGB1-201ENST00000326004 AHRRA9YTQ3 701 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 E7ENX8 843 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 E9PLN8 166 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 M0QYG6 137 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 TBC1D4O60343 1298 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 DNAJB5O75953 348 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 MAP4K4O95819 1239 aaPredicted RBP4.15□□□□□ -1.75
HMGB1-201ENST00000326004 ABHD16AO95870 558 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 GPANK1O95872 356 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 CFIP05156 583 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 PIM1P11309 404 aaPredicted RBP4.15□□□□□ -1.75
HMGB1-201ENST00000326004 SLC5A1P13866 664 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 FGFR4P22455 802 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 SUMO3P55854 103 aaPredicted RBP4.15□□□□□ -1.75
HMGB1-201ENST00000326004 TAP2Q03519 686 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 SLC13A2Q13183 592 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 RAB32Q13637 225 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 AMOTQ4VCS5 1084 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 CRB2Q5IJ48 1285 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 SPDYAQ5MJ70 313 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 FAM160B1Q5W0V3 765 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 LMBRD2Q68DH5 695 aaPredicted RBP4.15□□□□□ -1.75
HMGB1-201ENST00000326004 RNF207Q6ZRF8 634 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 PPP1R32Q7Z5V6 425 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 MAPKAPK5Q8IW41 473 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 NMD3Q96D46 503 aaKnown RBP4.15□□□□□ -1.75
HMGB1-201ENST00000326004 ZC3H10Q96K80 434 aaKnown RBP4.15□□□□□ -1.75
HMGB1-201ENST00000326004 MSLNLQ96KJ4 702 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 VKORC1Q9BQB6 163 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 TLR10Q9BXR5 811 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 SLC52A1Q9NWF4 448 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 CEP72Q9P209 647 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 AFF4Q9UHB7 1163 aaKnown RBP4.15□□□□□ -1.75
HMGB1-201ENST00000326004 KCNE5Q9UJ90 142 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 CDYLQ9Y232 598 aa4.15□□□□□ -1.75
HMGB1-201ENST00000326004 CCDC195A0A1B0GUA6 201 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 RHPN2P1A8MT19 583 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 C1QTNF3-AMACRE9PGA6 284 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 MYO1CO00159 1063 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 POLRMTO00411 1230 aaKnown RBP4.14□□□□□ -1.75
HMGB1-201ENST00000326004 BTN3A1O00481 513 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 SOAT2O75908 522 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 UNC5CO95185 931 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 GRPP07492 148 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 IFIT2P09913 472 aaKnown RBP4.14□□□□□ -1.75
HMGB1-201ENST00000326004 KCNA2P16389 499 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 BMPR1AP36894 532 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 PTTG1IPP53801 180 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 AK2P54819 239 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 HSD11B2P80365 405 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 FMO1Q01740 532 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 OCA2Q04671 838 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 BRD3Q15059 726 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 SPDYE7PQ495Y7 208 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 NRN1LQ496H8 165 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 IL31Q6EBC2 164 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 LRRC55Q6ZSA7 311 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 TMEM132CQ8N3T6 1108 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 ZNF276Q8N554 614 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 SAMD3Q8N6K7 520 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 PCSK9Q8NBP7 692 aaKnown RBP4.14□□□□□ -1.75
HMGB1-201ENST00000326004 EXTL1Q92935 676 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 BOD1Q96IK1 185 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 MOGAT1Q96PD6 335 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 STRBPQ96SI9 672 aaKnown RBP4.14□□□□□ -1.75
HMGB1-201ENST00000326004 SPATA5L1Q9BVQ7 753 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 APOL5Q9BWW9 433 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 NAA15Q9BXJ9 866 aaKnown RBP4.14□□□□□ -1.75
HMGB1-201ENST00000326004 UNKQ9C0B0 810 aaKnown RBP4.14□□□□□ -1.75
HMGB1-201ENST00000326004 ZNF518BQ9C0D4 1074 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 SMURF2Q9HAU4 748 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 ETAA1Q9NY74 926 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 CPNE7Q9UBL6 633 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 RGS17Q9UGC6 210 aaPredicted RBP4.14□□□□□ -1.75
HMGB1-201ENST00000326004 AGAP1Q9UPQ3 857 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 MTO1Q9Y2Z2 717 aaKnown RBP4.14□□□□□ -1.75
HMGB1-201ENST00000326004 NOX1Q9Y5S8 564 aa4.14□□□□□ -1.75
HMGB1-201ENST00000326004 A0A087WWL8 130 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 KRTAP4-8A0A0G2JLE6 195 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 A0A1W2PS29 197 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 TRIM43BA6NCK2 446 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 MYADML2A6NDP7 307 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 MBD3L4A6NDZ8 208 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-201ENST00000326004 MBD3L3A6NE82 208 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-201ENST00000326004 MARCH11A6NNE9 402 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 FAM20BO75063 409 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 ERN1O75460 977 aaKnown RBP4.13□□□□□ -1.75
HMGB1-201ENST00000326004 KIF20AO95235 890 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 ELANEP08246 267 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms