RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 PODXLO00592 558 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 LPXNO60711 386 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 TADA2AO75478 443 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 AKAP3O75969 853 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 B3GAT3O94766 335 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 NFICP08651 508 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 TRIM21P19474 475 aaKnown RBP10.85□□□□□ -0.67
UPF1-213ENST00000601981 LRPAP1P30533 357 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 KRT9P35527 623 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 PNPLA4P41247 253 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 PLCB3Q01970 1234 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 DCLRE1AQ6PJP8 1040 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 CCAR2Q8N163 923 aaKnown RBP10.85□□□□□ -0.67
UPF1-213ENST00000601981 KLHL23Q8NBE8 558 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 TMC2Q8TDI7 906 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 PPP2R3CQ969Q6 453 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 CCDC127Q96BQ5 260 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 IGSF21Q96ID5 467 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 MFSD14AQ96MC6 490 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 ZNF560Q96MR9 790 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 ZMAT2Q96NC0 199 aaKnown RBP10.85□□□□□ -0.67
UPF1-213ENST00000601981 DNAJC7Q99615 494 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 EDEM3Q9BZQ6 932 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 DPP3Q9NY33 737 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 HCSTQ9UBK5 93 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 ADAM28Q9UKQ2 775 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 ITGA11Q9UKX5 1188 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 SSX2IPQ9Y2D8 614 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 STXBP5LQ9Y2K9 1186 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 LUC7L2Q9Y383 392 aaKnown RBP10.85□□□□□ -0.67
UPF1-213ENST00000601981 EYSQ5T1H1 3165 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 NT5C1B-RDH14C9J2C7 533 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 PHACTR2O75167 634 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 CLSTN1O94985 981 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 ARHGEF15O94989 841 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 AFPP02771 609 aaKnown RBP10.84□□□□□ -0.67
UPF1-213ENST00000601981 LINC00271P0C7V0 271 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 PBX3P40426 434 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 CASP4P49662 377 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 CLCNKBP51801 687 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 VAMP7P51809 220 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 ZBED6P86452 979 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 BFSP1Q12934 665 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 NAB2Q15742 525 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 ZBTB6Q15916 424 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 UPP1Q16831 310 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 TCERG1LQ5VWI1 586 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 E4F1Q66K89 784 aaPredicted RBP10.84□□□□□ -0.67
UPF1-213ENST00000601981 PDE12Q6L8Q7 609 aaKnown RBP10.84□□□□□ -0.67
UPF1-213ENST00000601981 KIAA1841Q6NSI8 718 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 Q7L0L9 218 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 TMTC1Q8IUR5 882 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 EFCAB13Q8IY85 973 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 ZSWIM2Q8NEG5 633 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 ZNF397Q8NF99 534 aaPredicted RBP10.84□□□□□ -0.67
UPF1-213ENST00000601981 OR8K1Q8NGG5 319 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 GDPD5Q8WTR4 605 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 CPLX3Q8WVH0 158 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 C18orf25Q96B23 403 aaPredicted RBP10.84□□□□□ -0.67
UPF1-213ENST00000601981 BORCS6Q96GS4 357 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 PCMTD1Q96MG8 357 aaPredicted RBP10.84□□□□□ -0.67
UPF1-213ENST00000601981 TTYH1Q9H313 450 aaPredicted RBP10.84□□□□□ -0.67
UPF1-213ENST00000601981 GOLGA2P5Q9HBQ8 144 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 TLR9Q9NR96 1032 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 MTMR10Q9NXD2 777 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 LMCD1Q9NZU5 365 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 TUBGCP4Q9UGJ1 667 aa10.84□□□□□ -0.67
UPF1-213ENST00000601981 VCANP13611 3396 aa10.83□□□□□ -0.67
UPF1-213ENST00000601981 GTPBP10A4D1E9 387 aaKnown RBP10.83□□□□□ -0.68
UPF1-213ENST00000601981 RNF225M0QZC1 329 aaPredicted RBP10.83□□□□□ -0.68
UPF1-213ENST00000601981 MEFVO15553 781 aaPredicted RBP10.83□□□□□ -0.68
UPF1-213ENST00000601981 ZSCAN12O43309 604 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 KIF4AO95239 1232 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 ITGB1P05556 798 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 URODP06132 367 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 KRT19P08727 400 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 CA8P35219 290 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 TAF6P49848 677 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 KLK7P49862 253 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 RBP5P82980 135 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 CREMQ03060 361 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 SOX4Q06945 474 aaPredicted RBP10.83□□□□□ -0.68
UPF1-213ENST00000601981 KCNH2Q12809 1159 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 MYO1EQ12965 1108 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 BIRC3Q13489 604 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 TRPC3Q13507 836 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 MEA1Q16626 185 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 TSR1Q2NL82 804 aaKnown RBP10.83□□□□□ -0.68
UPF1-213ENST00000601981 SV2CQ496J9 727 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 TIGD5Q53EQ6 642 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 DCAF17Q5H9S7 520 aaPredicted RBP10.83□□□□□ -0.68
UPF1-213ENST00000601981 FUT10Q6P4F1 479 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 PDXDC1Q6P996 788 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 CYP26C1Q6V0L0 522 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 TMC7Q7Z402 723 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 DDX53Q86TM3 631 aaKnown RBP10.83□□□□□ -0.68
UPF1-213ENST00000601981 NEK11Q8NG66 645 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 MICAL1Q8TDZ2 1067 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 PARD3BQ8TEW8 1205 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 POF1BQ8WVV4 589 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms