RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 XYLT2Q9H1B5 865 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 CRISPLD1Q9H336 500 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 DPP3Q9NY33 737 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 CGNQ9P2M7 1197 aaKnown RBP10.66□□□□□ -0.7
CLN3-220ENST00000566040 FBXW11Q9UKB1 542 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 TIMM13Q9Y5L4 95 aaPredicted RBP10.66□□□□□ -0.7
CLN3-220ENST00000566040 HELZP42694 1942 aaKnown RBP10.66□□□□□ -0.7
CLN3-220ENST00000566040 WDR27A2RRH5 827 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 RFPL2O75678 378 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 LDHAP00338 332 aaKnown RBP10.65□□□□□ -0.7
CLN3-220ENST00000566040 ITGB3P05106 788 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 CYP11A1P05108 521 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 SPATA31D3P0C874 917 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 POLR2BP30876 1174 aaKnown RBP10.65□□□□□ -0.7
CLN3-220ENST00000566040 NDUFV1P49821 464 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 MRPS5P82675 430 aaKnown RBP10.65□□□□□ -0.7
CLN3-220ENST00000566040 SMAD2Q15796 467 aaKnown RBP10.65□□□□□ -0.7
CLN3-220ENST00000566040 TDRD10Q5VZ19 366 aaKnown RBP10.65□□□□□ -0.7
CLN3-220ENST00000566040 SLC8B1Q6J4K2 584 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 TTI2Q6NXR4 508 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 SPATA31D4Q6ZUB0 917 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 NT5DC4Q86YG4 428 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 GLYCTKQ8IVS8 523 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 RDH13Q8NBN7 331 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 BEST2Q8NFU1 509 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 OR10T2Q8NGX3 314 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 EEF2KMTQ96G04 330 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 SENP8Q96LD8 212 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 PKMYT1Q99640 499 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 APOL5Q9BWW9 433 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 CLSTN2Q9H4D0 955 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 MRPL17Q9NRX2 175 aaKnown RBP10.65□□□□□ -0.7
CLN3-220ENST00000566040 CD207Q9UJ71 328 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 FBXL5Q9UKA1 691 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 PCDHB8Q9UN66 801 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 USP15Q9Y4E8 981 aaPredicted RBP10.65□□□□□ -0.7
CLN3-220ENST00000566040 BACE2Q9Y5Z0 518 aa10.65□□□□□ -0.7
CLN3-220ENST00000566040 COL4A3Q01955 1670 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 GOLGA6L4A6NEF3 574 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 C19orf67A6NJJ6 358 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 ZNF233A6NK53 670 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 BIN1O00499 593 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 SYN3O14994 580 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 KINO60870 393 aaKnown RBP10.64□□□□□ -0.71
CLN3-220ENST00000566040 N4BP1O75113 896 aaKnown RBP10.64□□□□□ -0.71
CLN3-220ENST00000566040 ABLIM3O94929 683 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 OAZ2O95190 189 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 SEC24AO95486 1093 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 CST3P01034 146 aaPredicted RBP10.64□□□□□ -0.71
CLN3-220ENST00000566040 C4BPAP04003 597 aaKnown RBP10.64□□□□□ -0.71
CLN3-220ENST00000566040 WEE2P0C1S8 567 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 MCM4P33991 863 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 OR1D2P34982 312 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 TFAMQ00059 246 aaKnown RBP10.64□□□□□ -0.71
CLN3-220ENST00000566040 ROR1Q01973 937 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 ELAVL2Q12926 359 aaKnown RBP10.64□□□□□ -0.71
CLN3-220ENST00000566040 SMAD4Q13485 552 aaKnown RBP10.64□□□□□ -0.71
CLN3-220ENST00000566040 RAB33AQ14088 237 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 MYBPC2Q14324 1141 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 CAMK4Q16566 473 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 EDRF1Q3B7T1 1238 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 TJAP1Q5JTD0 557 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 ANKRD40Q6AI12 368 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 PTCRAQ6ISU1 281 aaPredicted RBP10.64□□□□□ -0.71
CLN3-220ENST00000566040 RBM43Q6ZSC3 357 aaKnown RBP10.64□□□□□ -0.71
CLN3-220ENST00000566040 HS2ST1Q7LGA3 356 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 CEP57Q86XR8 500 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 WDR49Q8IV35 697 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 TTC9BQ8N6N2 239 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 KBTBD7Q8WVZ9 684 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 SMARCE1Q969G3 411 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 MAN1C1Q9NR34 630 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 KIAA1468Q9P260 1216 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 STK39Q9UEW8 545 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 L1RE1Q9UN81 338 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 CDY1Q9Y6F8 540 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 MYO16Q9Y6X6 1858 aa10.64□□□□□ -0.71
CLN3-220ENST00000566040 MAPK13O15264 365 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 NCK2O43639 380 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 C1RP00736 705 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 OR4Q2P0C623 313 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 TRIM49P0CI25 452 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 TRIM49CP0CI26 452 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 TYMPP19971 482 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 NR2F2P24468 414 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 ZP2Q05996 745 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 PPP3CAQ08209 521 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 WSCD1Q658N2 575 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 TRAPPC11Q7Z392 1133 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 LRRTM3Q86VH5 581 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 PALB2Q86YC2 1186 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 LRRC52Q8N7C0 313 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 GOLGA5Q8TBA6 731 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 ADAMTS19Q8TE59 1207 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 NOC3LQ8WTT2 800 aaKnown RBP10.63□□□□□ -0.71
CLN3-220ENST00000566040 CCDC127Q96BQ5 260 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 POMKQ9H5K3 350 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 KIAA1586Q9HCI6 787 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.63□□□□□ -0.71
CLN3-220ENST00000566040 TMLHEQ9NVH6 421 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms