RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 SCAIQ8N9R8 606 aa10.02□□□□□ -0.81
CTNNA1-243ENST00000540387 ATP6V0A1Q93050 837 aa10.02□□□□□ -0.81
CTNNA1-243ENST00000540387 MCUR1Q96AQ8 359 aa10.02□□□□□ -0.81
CTNNA1-243ENST00000540387 SERPINB12Q96P63 405 aa10.02□□□□□ -0.81
CTNNA1-243ENST00000540387 PPP1R10Q96QC0 940 aaKnown RBP10.02□□□□□ -0.81
CTNNA1-243ENST00000540387 OSBPL10Q9BXB5 764 aa10.02□□□□□ -0.81
CTNNA1-243ENST00000540387 NKIRAS1Q9NYS0 192 aa10.02□□□□□ -0.81
CTNNA1-243ENST00000540387 MTRF1LQ9UGC7 380 aaKnown RBP10.02□□□□□ -0.81
CTNNA1-243ENST00000540387 HBS1LQ9Y450 684 aaKnown RBP10.02□□□□□ -0.81
CTNNA1-243ENST00000540387 MATN2O00339 956 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 GYG2O15488 501 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 ADAM23O75077 832 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 CBFA2T3O75081 653 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 RARGP13631 454 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 CPA3P15088 417 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 PCSK6P29122 969 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 STIP1P31948 543 aaKnown RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 ACADVLP49748 655 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 NAA20P61599 178 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 JAG1P78504 1218 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 ARID5AQ03989 594 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 CCDC153Q494R4 210 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 NBPF12Q5TAG4 269 aaPredicted RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 ADAT2Q7Z6V5 191 aaKnown RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 DGKHQ86XP1 1220 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 SCYL3Q8IZE3 742 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 ZNF654Q8IZM8 581 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 SPOCK2Q92563 424 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 SYN2Q92777 582 aaPredicted RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 TMEM60Q9H2L4 133 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 SLCO1B3Q9NPD5 702 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 ARMCX3Q9UH62 379 aaPredicted RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 TELO2Q9Y4R8 837 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 FOCADQ5VW36 1801 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 SH3PXD2BA1X283 911 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 EPHX2P34913 555 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 RPL21P46778 160 aaKnown RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 TMED10P49755 219 aaKnown RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 NT5C2P49902 561 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 IL9RQ01113 521 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 PFKPQ01813 784 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 PPIDQ08752 370 aaKnown RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 MED21Q13503 144 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 LPIN1Q14693 890 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 C6orf183Q5T699 404 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 POTEEQ6S8J3 1075 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 RFX8Q6ZV50 586 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 GET4Q7L5D6 327 aaPredicted RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 CLNKQ7Z7G1 428 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 VPS52Q8N1B4 723 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 SYT2Q8N9I0 419 aaPredicted RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 TPCN2Q8NHX9 752 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 DRC3Q9H069 523 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 ERVK-5Q9HDB9 667 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 DISC1Q9NRI5 854 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 HERC5Q9UII4 1024 aaKnown RBP10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 NUMBLQ9Y6R0 609 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 NID2Q14112 1375 aa10.01□□□□□ -0.81
CTNNA1-243ENST00000540387 POTEFA5A3E0 1075 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 A8MXQ7 604 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 POTEIP0CG38 1075 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 SMIM18P0DKX4 95 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 TROAPQ12815 778 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 STK4Q13043 487 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 SLC45A4Q5BKX6 768 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 FAM83BQ5T0W9 1011 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 TMEM214Q6NUQ4 689 aaKnown RBP10□□□□□ -0.81
CTNNA1-243ENST00000540387 MTDHQ86UE4 582 aaKnown RBP10□□□□□ -0.81
CTNNA1-243ENST00000540387 DNAAF5Q86Y56 855 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 SREK1Q8WXA9 508 aaKnown RBP10□□□□□ -0.81
CTNNA1-243ENST00000540387 CCDC17Q96LX7 622 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 CGREF1Q99674 301 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 TMEM47Q9BQJ4 181 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 PHF20Q9BVI0 1012 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 RBM38Q9H0Z9 239 aaKnown RBP10□□□□□ -0.81
CTNNA1-243ENST00000540387 TPK1Q9H3S4 243 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 NDE1Q9NXR1 346 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 MTMR4Q9NYA4 1195 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 CEP72Q9P209 647 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 FAF1Q9UNN5 650 aaPredicted RBP10□□□□□ -0.81
CTNNA1-243ENST00000540387 MTMR7Q9Y216 660 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 ITM2BQ9Y287 266 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 LAMB1P07942 1786 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 MAGEB2O15479 319 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 ZWINTO95229 277 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 RPL5P46777 297 aaKnown RBP10□□□□□ -0.81
CTNNA1-243ENST00000540387 WDR4P57081 412 aaKnown RBP10□□□□□ -0.81
CTNNA1-243ENST00000540387 PDE4DQ08499 809 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 KCTD21Q4G0X4 260 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 PPP1R21Q6ZMI0 780 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 NLRP9Q7RTR0 991 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 CATIPQ7Z7H3 387 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 PHLDB2Q86SQ0 1253 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 APOBEC3FQ8IUX4 373 aaKnown RBP10□□□□□ -0.81
CTNNA1-243ENST00000540387 FANCBQ8NB91 859 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 PLEKHO2Q8TD55 490 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 GIPC3Q8TF64 312 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 HEPHQ9BQS7 1158 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 BHMT2Q9H2M3 363 aa10□□□□□ -0.81
CTNNA1-243ENST00000540387 SEMA6BQ9H3T3 888 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms