RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 HSFX1Q9UBD0 423 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 NOX1Q9Y5S8 564 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 CCDC180Q9P1Z9 1646 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 PRSS29PA6NIE9 313 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 H3BUI4 141 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 LPXNO60711 386 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 CDKL5O76039 1030 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 FSHBP01225 129 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 CXADRP78310 365 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 GUCY1B3Q02153 619 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 PLS1Q14651 629 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 KIF22Q14807 665 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 MLC1Q15049 377 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 PTPAQ15257 358 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 ULK2Q8IYT8 1036 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 MYO1HQ8N1T3 1032 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 AMER2Q8N7J2 671 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 TMIEQ8NEW7 156 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 SCAMP4Q969E2 229 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 FUBP1Q96AE4 644 aaKnown RBP7.6□□□□□ -1.19
USP40-213ENST00000483216 RUNDC1Q96C34 613 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 SLC35A4Q96G79 324 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 TLR10Q9BXR5 811 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 ALOXE3Q9BYJ1 711 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 GABBR1Q9UBS5 961 aa7.6□□□□□ -1.19
USP40-213ENST00000483216 MYADML2A6NDP7 307 aa7.59□□□□□ -1.19
USP40-213ENST00000483216 UBXN7O94888 489 aa7.59□□□□□ -1.19
USP40-213ENST00000483216 MATN4O95460 622 aa7.59□□□□□ -1.19
USP40-213ENST00000483216 GJB1P08034 283 aa7.59□□□□□ -1.19
USP40-213ENST00000483216 SH2D3CQ8N5H7 860 aa7.59□□□□□ -1.19
USP40-213ENST00000483216 Q8NA96 180 aa7.59□□□□□ -1.19
USP40-213ENST00000483216 SLC16A11Q8NCK7 471 aa7.59□□□□□ -1.19
USP40-213ENST00000483216 SLC17A8Q8NDX2 589 aa7.59□□□□□ -1.19
USP40-213ENST00000483216 LARP4BQ92615 738 aaKnown RBP7.59□□□□□ -1.19
USP40-213ENST00000483216 MTFMTQ96DP5 389 aaKnown RBP7.59□□□□□ -1.19
USP40-213ENST00000483216 GPR35Q9HC97 309 aa7.59□□□□□ -1.19
USP40-213ENST00000483216 MTO1Q9Y2Z2 717 aaKnown RBP7.59□□□□□ -1.19
USP40-213ENST00000483216 A0A088AWK7 358 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 ERC2O15083 957 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 B3GALT2O43825 422 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 CTNND1O60716 968 aaKnown RBP7.58□□□□□ -1.2
USP40-213ENST00000483216 FOSP01100 380 aaPredicted RBP7.58□□□□□ -1.2
USP40-213ENST00000483216 HTR1BP28222 390 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 POU6F2P78424 691 aaPredicted RBP7.58□□□□□ -1.2
USP40-213ENST00000483216 ZNF844Q08AG5 666 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 CYP2A13Q16696 494 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 PPP1R3BQ86XI6 285 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 BRIX1Q8TDN6 353 aaKnown RBP7.58□□□□□ -1.2
USP40-213ENST00000483216 NEU4Q8WWR8 484 aaPredicted RBP7.58□□□□□ -1.2
USP40-213ENST00000483216 TNPO1Q92973 898 aaKnown RBP7.58□□□□□ -1.2
USP40-213ENST00000483216 LRFN3Q9BTN0 628 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 IMPG2Q9BZV3 1241 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 SCAND2PQ9GZW5 306 aaPredicted RBP7.58□□□□□ -1.2
USP40-213ENST00000483216 TMPRSS5Q9H3S3 457 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 GALNT9Q9HCQ5 603 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 NEU2Q9Y3R4 380 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 PCDHA1Q9Y5I3 950 aa7.58□□□□□ -1.2
USP40-213ENST00000483216 ERN1O75460 977 aaKnown RBP7.57□□□□□ -1.2
USP40-213ENST00000483216 SPDEFO95238 335 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 CHEK2O96017 543 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 RARBP10826 455 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 PIGFQ07326 219 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 TP53BP2Q13625 1128 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 EMC10Q5UCC4 262 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 CFAP52Q8N1V2 620 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 ZBTB34Q8NCN2 500 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 PDPRQ8NCN5 879 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 PLBD2Q8NHP8 589 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 PPP1R35Q8TAP8 253 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 TSR2Q969E8 191 aaKnown RBP7.57□□□□□ -1.2
USP40-213ENST00000483216 NACC2Q96BF6 587 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 RNF31Q96EP0 1072 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 PRRX2Q99811 253 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 PCED1AQ9H1Q7 454 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 SERHL2Q9H4I8 314 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 SLAMF7Q9NQ25 335 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 C1orf112Q9NSG2 853 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 ANKFY1Q9P2R3 1169 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 CDYLQ9Y232 598 aa7.57□□□□□ -1.2
USP40-213ENST00000483216 PIPSLA2A3N6 862 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 GOLGA6CA6NDK9 693 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 GOLGA6BA6NDN3 693 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 UNC119BA6NIH7 251 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 E9PLN8 166 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 AKAP8O43823 692 aaKnown RBP7.56□□□□□ -1.2
USP40-213ENST00000483216 TUSC2O75896 110 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 GOLGA6DP0CG33 693 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 KCNA2P16389 499 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 RAB1AP62820 205 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 TAP1Q03518 808 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.56□□□□□ -1.2
USP40-213ENST00000483216 ZNF627Q7L945 461 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 VKORC1Q9BQB6 163 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 SIK2Q9H0K1 926 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 GOLGA6AQ9NYA3 693 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 VSX1Q9NZR4 365 aaPredicted RBP7.56□□□□□ -1.2
USP40-213ENST00000483216 CTTNBP2NLQ9P2B4 639 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 SRRDQ9UH36 339 aa7.56□□□□□ -1.2
USP40-213ENST00000483216 A0A1W2PS29 197 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 ZNF785A8K8V0 405 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms