RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 SHC3Q92529 594 aa22.72■■□□□ 1.23
CPNE1-204ENST00000397443 SYN2Q92777 582 aaPredicted RBP22.72■■□□□ 1.23
CPNE1-204ENST00000397443 BADQ92934 168 aa22.72■■□□□ 1.23
CPNE1-204ENST00000397443 SMYD3Q9H7B4 428 aa22.72■■□□□ 1.23
CPNE1-204ENST00000397443 DAAM1Q9Y4D1 1078 aa22.72■■□□□ 1.23
CPNE1-204ENST00000397443 PCDHB4Q9Y5E5 795 aa22.72■■□□□ 1.23
CPNE1-204ENST00000397443 SNX9Q9Y5X1 595 aa22.72■■□□□ 1.23
CPNE1-204ENST00000397443 ANO9A1A5B4 782 aa22.71■■□□□ 1.23
CPNE1-204ENST00000397443 CYP26A1O43174 497 aa22.71■■□□□ 1.23
CPNE1-204ENST00000397443 CALCAP01258 141 aa22.71■■□□□ 1.23
CPNE1-204ENST00000397443 TNNC1P63316 161 aa22.71■■□□□ 1.23
CPNE1-204ENST00000397443 RNASELQ05823 741 aaKnown RBP22.71■■□□□ 1.23
CPNE1-204ENST00000397443 GRIK3Q13003 919 aa22.71■■□□□ 1.23
CPNE1-204ENST00000397443 HGSNATQ68CP4 663 aa22.71■■□□□ 1.23
CPNE1-204ENST00000397443 ENOSF1Q7L5Y1 443 aa22.71■■□□□ 1.23
CPNE1-204ENST00000397443 HAUS4Q9H6D7 363 aa22.71■■□□□ 1.23
CPNE1-204ENST00000397443 NHEJ1Q9H9Q4 299 aaPredicted RBP22.71■■□□□ 1.23
CPNE1-204ENST00000397443 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.71■■□□□ 1.23
CPNE1-204ENST00000397443 ZKSCAN5Q9Y2L8 839 aa22.71■■□□□ 1.23
CPNE1-204ENST00000397443 PIRO00625 290 aa22.7■■□□□ 1.23
CPNE1-204ENST00000397443 FERP16591 822 aa22.7■■□□□ 1.23
CPNE1-204ENST00000397443 EIF4A3P38919 411 aaKnown RBP22.7■■□□□ 1.23
CPNE1-204ENST00000397443 FAM117BQ6P1L5 589 aa22.7■■□□□ 1.23
CPNE1-204ENST00000397443 TMEM270Q6UE05 265 aa22.7■■□□□ 1.23
CPNE1-204ENST00000397443 OTOP2Q7RTS6 562 aa22.7■■□□□ 1.23
CPNE1-204ENST00000397443 TMCO2Q7Z6W1 182 aaPredicted RBP22.7■■□□□ 1.23
CPNE1-204ENST00000397443 C17orf53Q8N3J3 647 aaPredicted RBP22.7■■□□□ 1.23
CPNE1-204ENST00000397443 URGCPQ8TCY9 931 aa22.7■■□□□ 1.23
CPNE1-204ENST00000397443 DESI2Q9BSY9 194 aa22.7■■□□□ 1.23
CPNE1-204ENST00000397443 DEF6Q9H4E7 631 aa22.7■■□□□ 1.23
CPNE1-204ENST00000397443 ELAC1Q9H777 363 aaKnown RBP22.7■■□□□ 1.23
CPNE1-204ENST00000397443 FAM170AA1A519 330 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 PODXLO00592 558 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 SPTLC1O15269 473 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 ARHGAP6O43182 974 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 SERPING1P05155 500 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 FECHP22830 423 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 PAN2Q504Q3 1202 aaKnown RBP22.7■■□□□ 1.22
CPNE1-204ENST00000397443 ZNF394Q53GI3 561 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 ZNF280BQ86YH2 543 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 FAM71AQ8IYT1 594 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 RPUSD2Q8IZ73 545 aaKnown RBP22.7■■□□□ 1.22
CPNE1-204ENST00000397443 LRRC52Q8N7C0 313 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 FAM81BQ96LP2 452 aa22.7■■□□□ 1.22
CPNE1-204ENST00000397443 ZMYND8Q9ULU4 1186 aaPredicted RBP22.7■■□□□ 1.22
CPNE1-204ENST00000397443 LRPAP1P30533 357 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 TAF6P49848 677 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 TOGARAM2Q6ZUX3 1019 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 CCDC42Q96M95 316 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 ZNF560Q96MR9 790 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.69■■□□□ 1.22
CPNE1-204ENST00000397443 SDCBP2Q9H190 292 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 CISHQ9NSE2 258 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 TBC1D13Q9NVG8 400 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 B4GALT3O60512 393 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 P4HA1P13674 534 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 ACO1P21399 889 aaKnown RBP22.69■■□□□ 1.22
CPNE1-204ENST00000397443 PTK2Q05397 1052 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 SLC47A2Q86VL8 602 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 NPAS4Q8IUM7 802 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 HASPINQ8TF76 798 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 VRTNQ9H8Y1 702 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 SPTLC3Q9NUV7 552 aa22.69■■□□□ 1.22
CPNE1-204ENST00000397443 TBKBP1A7MCY6 615 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 KPNA7A9QM74 516 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 DDHD2O94830 711 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 CLCN1P35523 988 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 LILRA4P59901 499 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 ORC1Q13415 861 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 TUSC3Q13454 348 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 ZNF571Q7Z3V5 609 aaPredicted RBP22.68■■□□□ 1.22
CPNE1-204ENST00000397443 C3orf58Q8NDZ4 430 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 DPF3Q92784 378 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 HTATIP2Q9BUP3 242 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 IL23AQ9NPF7 189 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 HCSTQ9UBK5 93 aa22.68■■□□□ 1.22
CPNE1-204ENST00000397443 DEFB103AP81534 67 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 FPGSQ05932 587 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 RBBP8NLQ8NC74 664 aaPredicted RBP22.67■■□□□ 1.22
CPNE1-204ENST00000397443 SLC20A1Q8WUM9 679 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 CASD1Q96PB1 797 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 FAM193BQ96PV7 902 aaPredicted RBP22.67■■□□□ 1.22
CPNE1-204ENST00000397443 BCO2Q9BYV7 579 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 ABHD14A-ACY1A0A1B0GW23 586 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 ZBBXA8MT70 800 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 F8W810 466 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 AKR1B10O60218 316 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 B3GAT3O94766 335 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 STAU1O95793 577 aaKnown RBP22.67■■□□□ 1.22
CPNE1-204ENST00000397443 PNPLA4P41247 253 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 CDK17Q00537 523 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 UPP1Q16831 310 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 SV2CQ496J9 727 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 TAF3Q5VWG9 929 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 C16orf59Q7L2K0 433 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 CRIPAKQ8N1N5 446 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 SEPT11Q9NVA2 429 aaKnown RBP22.67■■□□□ 1.22
CPNE1-204ENST00000397443 DNAJB4Q9UDY4 337 aa22.67■■□□□ 1.22
CPNE1-204ENST00000397443 INPPL1O15357 1258 aa22.66■■□□□ 1.22
CPNE1-204ENST00000397443 CCDC172P0C7W6 258 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms