RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 PLEKHH2Q8IVE3 1493 aa11.17□□□□□ -0.62
DEPDC4-208ENST00000549341 CDC42BPAQ5VT25 1732 aa11.16□□□□□ -0.62
DEPDC4-208ENST00000549341 KIAA1107Q9UPP5 1409 aa11.16□□□□□ -0.62
DEPDC4-208ENST00000549341 CCNB3Q8WWL7 1395 aa11.16□□□□□ -0.62
DEPDC4-208ENST00000549341 POLR1AO95602 1720 aaPredicted RBP11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 FAM135AQ9P2D6 1515 aa11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 PZPP20742 1482 aa11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 FAM163AQ96GL9 167 aaPredicted RBP11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 RNF17Q9BXT8 1623 aaKnown RBP11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 LRRC7Q96NW7 1537 aa11.14□□□□□ -0.63
DEPDC4-208ENST00000549341 KDM5DQ9BY66 1539 aa11.14□□□□□ -0.63
DEPDC4-208ENST00000549341 UGGT1Q9NYU2 1555 aa11.13□□□□□ -0.63
DEPDC4-208ENST00000549341 THEMISQ8N1K5 641 aaPredicted RBP11.13□□□□□ -0.63
DEPDC4-208ENST00000549341 FYCO1Q9BQS8 1478 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 ZNF644Q9H582 1327 aaPredicted RBP11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 WASHC2CQ9Y4E1 1318 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 KIF3BO15066 747 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 TIE1P35590 1138 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 POTEAQ6S8J7 498 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 BMP2KQ9NSY1 1161 aaPredicted RBP11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 NLRP1Q9C000 1473 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 SYNMO15061 1565 aa11.11□□□□□ -0.63
DEPDC4-208ENST00000549341 MED14O60244 1454 aa11.11□□□□□ -0.63
DEPDC4-208ENST00000549341 MIA2Q96PC5 1412 aa11.1□□□□□ -0.63
DEPDC4-208ENST00000549341 SRCAPQ6ZRS2 3230 aa11.1□□□□□ -0.63
DEPDC4-208ENST00000549341 DHX29Q7Z478 1369 aaKnown RBP11.1□□□□□ -0.63
DEPDC4-208ENST00000549341 IQGAP1P46940 1657 aa11.09□□□□□ -0.63
DEPDC4-208ENST00000549341 ADGBQ8N7X0 1667 aa11.09□□□□□ -0.63
DEPDC4-208ENST00000549341 MTUS2Q5JR59 1369 aa11.09□□□□□ -0.63
DEPDC4-208ENST00000549341 MIER1Q8N108 512 aa11.08□□□□□ -0.64
DEPDC4-208ENST00000549341 DEPDC5O75140 1603 aa11.08□□□□□ -0.64
DEPDC4-208ENST00000549341 MAP3K13O43283 966 aa11.07□□□□□ -0.64
DEPDC4-208ENST00000549341 LCE2DQ5TA82 110 aaPredicted RBP11.07□□□□□ -0.64
DEPDC4-208ENST00000549341 MBD5Q9P267 1494 aa11.06□□□□□ -0.64
DEPDC4-208ENST00000549341 SEC24BO95487 1268 aa11.06□□□□□ -0.64
DEPDC4-208ENST00000549341 SETD1AO15047 1707 aaKnown RBP11.06□□□□□ -0.64
DEPDC4-208ENST00000549341 POTEFA5A3E0 1075 aa11.05□□□□□ -0.64
DEPDC4-208ENST00000549341 RTEL1-TNFRSF6BF6WH68 1400 aa11.05□□□□□ -0.64
DEPDC4-208ENST00000549341 CCDC141Q6ZP82 1450 aa11.05□□□□□ -0.64
DEPDC4-208ENST00000549341 SCAF11Q99590 1463 aaKnown RBP11.05□□□□□ -0.64
DEPDC4-208ENST00000549341 TIAM1Q13009 1591 aa11.04□□□□□ -0.64
DEPDC4-208ENST00000549341 STRCP1A6NGW2 1772 aa11.04□□□□□ -0.64
DEPDC4-208ENST00000549341 SGIP1Q9BQI5 828 aa11.03□□□□□ -0.64
DEPDC4-208ENST00000549341 TRPC6Q9Y210 931 aa11.03□□□□□ -0.64
DEPDC4-208ENST00000549341 ERVK-7P63135 1459 aa11.02□□□□□ -0.65
DEPDC4-208ENST00000549341 RASEFQ8IZ41 740 aa11.02□□□□□ -0.65
DEPDC4-208ENST00000549341 TMEM94Q12767 1356 aa11.02□□□□□ -0.65
DEPDC4-208ENST00000549341 FAM135BQ49AJ0 1406 aa11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 ABCC3O15438 1527 aa11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 TTLL13PA6NNM8 815 aa11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 IER5LQ5T953 404 aa11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 RBM33Q96EV2 1170 aaKnown RBP11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 CAMSAP2Q08AD1 1489 aa11□□□□□ -0.65
DEPDC4-208ENST00000549341 TXNDC2Q86VQ3 553 aa11□□□□□ -0.65
DEPDC4-208ENST00000549341 TRIM52Q96A61 297 aa11□□□□□ -0.65
DEPDC4-208ENST00000549341 CEP162Q5TB80 1403 aa11□□□□□ -0.65
DEPDC4-208ENST00000549341 EHBP1L1Q8N3D4 1523 aa10.99□□□□□ -0.65
DEPDC4-208ENST00000549341 LTKP29376 864 aa10.99□□□□□ -0.65
DEPDC4-208ENST00000549341 ZC3H13Q5T200 1668 aaKnown RBP10.98□□□□□ -0.65
DEPDC4-208ENST00000549341 MEX3CQ5U5Q3 659 aaKnown RBP10.98□□□□□ -0.65
DEPDC4-208ENST00000549341 EID1Q9Y6B2 187 aa10.98□□□□□ -0.65
DEPDC4-208ENST00000549341 NCOA2Q15596 1464 aa10.98□□□□□ -0.65
DEPDC4-208ENST00000549341 UPF1Q92900 1129 aaKnown RBP eCLIP10.97□□□□□ -0.65
DEPDC4-208ENST00000549341 ZBTB47Q9UFB7 747 aaPredicted RBP10.97□□□□□ -0.65
DEPDC4-208ENST00000549341 COLQQ9Y215 455 aaPredicted RBP10.97□□□□□ -0.65
DEPDC4-208ENST00000549341 ROBO1Q9Y6N7 1651 aa10.96□□□□□ -0.65
DEPDC4-208ENST00000549341 LRRC9Q6ZRR7 1453 aa10.96□□□□□ -0.65
DEPDC4-208ENST00000549341 JCADQ9P266 1359 aa10.96□□□□□ -0.65
DEPDC4-208ENST00000549341 MAP3K1Q13233 1512 aa10.95□□□□□ -0.66
DEPDC4-208ENST00000549341 PLCD3Q8N3E9 789 aa10.95□□□□□ -0.66
DEPDC4-208ENST00000549341 TRIM35Q9UPQ4 493 aa10.95□□□□□ -0.66
DEPDC4-208ENST00000549341 SLIT1O75093 1534 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 ARHGAP23Q9P227 1491 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 TSPY4P0CV99 314 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 TSPY10P0CW01 314 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 PROSER2Q86WR7 435 aaPredicted RBP10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 SLC26A8Q96RN1 970 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 PCDHB13Q9Y5F0 798 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 MSH6P52701 1360 aa10.93□□□□□ -0.66
DEPDC4-208ENST00000549341 LRP6O75581 1613 aa10.93□□□□□ -0.66
DEPDC4-208ENST00000549341 UBR1Q8IWV7 1749 aa10.92□□□□□ -0.66
DEPDC4-208ENST00000549341 TMEM2Q9UHN6 1383 aa10.92□□□□□ -0.66
DEPDC4-208ENST00000549341 CDAN1Q8IWY9 1227 aa10.92□□□□□ -0.66
DEPDC4-208ENST00000549341 BCANQ96GW7 911 aa10.92□□□□□ -0.66
DEPDC4-208ENST00000549341 KCNA6P17658 529 aa10.91□□□□□ -0.66
DEPDC4-208ENST00000549341 RSPH4AQ5TD94 716 aa10.91□□□□□ -0.66
DEPDC4-208ENST00000549341 ZNF772Q68DY9 489 aaPredicted RBP10.91□□□□□ -0.66
DEPDC4-208ENST00000549341 MROH1Q8NDA8 1641 aa10.91□□□□□ -0.66
DEPDC4-208ENST00000549341 PRDM15P57071 1507 aaPredicted RBP10.9□□□□□ -0.66
DEPDC4-208ENST00000549341 NKTRP30414 1462 aaKnown RBP10.9□□□□□ -0.66
DEPDC4-208ENST00000549341 XIRP1Q702N8 1843 aaKnown RBP10.9□□□□□ -0.66
DEPDC4-208ENST00000549341 SLAIN2Q9P270 581 aa10.89□□□□□ -0.67
DEPDC4-208ENST00000549341 ARHGEF5Q12774 1597 aa10.89□□□□□ -0.67
DEPDC4-208ENST00000549341 PHLPP1O60346 1717 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 RXRBP28702 533 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 C14orf37Q86TY3 774 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 SLAIN1Q8ND83 568 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 EFCAB6Q5THR3 1501 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 SPATA31A6Q5VVP1 1343 aa10.87□□□□□ -0.67
DEPDC4-208ENST00000549341 CEP152O94986 1710 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms