RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TMEM134Q9H6X4 195 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 UVRAGQ9P2Y5 699 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 RWDD2BP57060 319 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 RPL7AP62424 266 aaKnown RBP11.33□□□□□ -0.6
CUX1-217ENST00000558836 PPIL2Q13356 520 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 PDCLQ13371 301 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 MAP1SQ66K74 1059 aaPredicted RBP11.33□□□□□ -0.6
CUX1-217ENST00000558836 CCDC62Q6P9F0 684 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 KCNH4Q9UQ05 1017 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 DNAJC25-GNG10A0A024R161 153 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 CCDC66A2RUB6 948 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 PHF2O75151 1096 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 MTA2O94776 668 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 TCF4P15884 667 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 OSBPP22059 807 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 PTGIRP43119 386 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 RPL21P46778 160 aaKnown RBP11.33□□□□□ -0.6
CUX1-217ENST00000558836 RAP1GAPP47736 663 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 GNGT1P63211 74 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 GUCY1A3Q02108 690 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 ZNF568Q3ZCX4 644 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 ATP13A4Q4VNC1 1196 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 DUPD1Q68J44 220 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 ARMCX2Q7L311 632 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 TMC3Q7Z5M5 1100 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 CCDC50Q8IVM0 306 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 ZBTB8OSQ8IWT0 167 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 EFCAB13Q8IY85 973 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 MREGQ8N565 214 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 ZNF606Q8WXB4 792 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 SLC10A4Q96EP9 437 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 FMO2Q99518 471 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 CCDC113Q9H0I3 377 aa11.33□□□□□ -0.6
CUX1-217ENST00000558836 DIS3Q9Y2L1 958 aaKnown RBP11.33□□□□□ -0.6
CUX1-217ENST00000558836 SMIM23A6NLE4 172 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 DCDC2CA8MYV0 355 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 KIAA0391O15091 583 aaKnown RBP11.32□□□□□ -0.6
CUX1-217ENST00000558836 VTNP04004 478 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 CYP1A1P04798 512 aaPredicted RBP11.32□□□□□ -0.6
CUX1-217ENST00000558836 CXCL8P10145 99 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 VPS41P49754 854 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 IRAK1P51617 712 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 BRSK2Q8IWQ3 736 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 ABRAQ8N0Z2 381 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 ACSF2Q96CM8 615 aaPredicted RBP11.32□□□□□ -0.6
CUX1-217ENST00000558836 CAPS2Q9BXY5 557 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 IMPG2Q9BZV3 1241 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 CHST7Q9NS84 486 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 RSPH14Q9UHP6 348 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 GINS2Q9Y248 185 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 INSRRP14616 1297 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 TMOD1P28289 359 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 ADCYAP1R1P41586 468 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 CDH8P55286 799 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 TAS2R40P59535 323 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 NOMO3P69849 1222 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 CENPCQ03188 943 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 ZNF844Q08AG5 666 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 TCEAL1Q15170 157 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 ZFYVE27Q5T4F4 411 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 ATF7IP2Q5U623 682 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 MON1BQ7L1V2 547 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 ANKS1BQ7Z6G8 1248 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 PRUNE1Q86TP1 453 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 C1orf131Q8NDD1 294 aaKnown RBP11.32□□□□□ -0.6
CUX1-217ENST00000558836 CPB2Q96IY4 423 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 RAB17Q9H0T7 212 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 POLIQ9UNA4 740 aa11.32□□□□□ -0.6
CUX1-217ENST00000558836 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.31□□□□□ -0.6
CUX1-217ENST00000558836 BHMG1C9JSJ3 638 aaPredicted RBP11.31□□□□□ -0.6
CUX1-217ENST00000558836 H0YGN5 161 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 ABLIM1O14639 778 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 TLR3O15455 904 aaKnown RBP11.31□□□□□ -0.6
CUX1-217ENST00000558836 ASS1P00966 412 aaKnown RBP11.31□□□□□ -0.6
CUX1-217ENST00000558836 SHBGP04278 402 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 CTNNA2P26232 953 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 EFNA5P52803 228 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 MAMLD1Q13495 774 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 TRPC3Q13507 836 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 MXD4Q14582 209 aaPredicted RBP11.31□□□□□ -0.6
CUX1-217ENST00000558836 TTLL4Q14679 1199 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 SIX1Q15475 284 aaPredicted RBP11.31□□□□□ -0.6
CUX1-217ENST00000558836 CYP4A22Q5TCH4 519 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 ZPBP2Q6X784 338 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 FASTKD5Q7L8L6 764 aaKnown RBP11.31□□□□□ -0.6
CUX1-217ENST00000558836 CCDC25Q86WR0 208 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 LRRC45Q96CN5 670 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 FAM167AQ96KS9 214 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 FAM114A2Q9NRY5 505 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 CISHQ9NSE2 258 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 RNF19AQ9NV58 838 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 DNAJC17Q9NVM6 304 aaKnown RBP11.31□□□□□ -0.6
CUX1-217ENST00000558836 NFS1Q9Y697 457 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 A0A087WZ62 844 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 PI4K2BG5E9Z4 385 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 OGTO15294 1046 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 TMEM191BP0C7N4 346 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 ADORA2AP29274 412 aa11.31□□□□□ -0.6
CUX1-217ENST00000558836 COILP38432 576 aaPredicted RBP11.31□□□□□ -0.6
CUX1-217ENST00000558836 BPIFB4P59827 614 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms