RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PSMC1P62191 440 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 KRT81Q14533 505 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 KIF22Q14807 665 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 DCAF15Q66K64 600 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 GPAT2Q6NUI2 795 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 DARS2Q6PI48 645 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 C1orf228Q6PIY5 440 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 SLC17A8Q8NDX2 589 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 FAM129AQ9BZQ8 928 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 NRBP2Q9NSY0 501 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 KCND2Q9NZV8 630 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 AKT3Q9Y243 479 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 PLIN4Q96Q06 1357 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 SPATA31A6Q5VVP1 1343 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 DNM1LO00429 736 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 KITP10721 976 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 GMPSP49915 693 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 Q3C1V9 767 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 ZNF568Q3ZCX4 644 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 CROCCP2Q86T23 111 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 MREGQ8N565 214 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 TMEM161BQ8NDZ6 487 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 PRCCQ92733 491 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 RSRC1Q96IZ7 334 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 AS3MTQ9HBK9 375 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 UMODL1Q5DID0 1318 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 CCDC195A0A1B0GUA6 201 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 F8VP50 259 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 RARGP13631 454 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 RFX1P22670 979 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 ANXA13P27216 316 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 TNFRSF8P28908 595 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 MAGEA4P43358 317 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 CDH8P55286 799 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 STXBP2Q15833 593 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 MDH1BQ5I0G3 518 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 OSBPL7Q9BZF2 842 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 E2F8A0AVK6 867 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 PIK3CDO00329 1044 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 RGL2O15211 777 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 GGPS1O95749 300 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 PGK2P07205 417 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 CHRNB2P17787 502 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 ADSSP30520 456 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 TAS2R40P59535 323 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 MYL6P60660 151 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 SPDYE2Q495Y8 402 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 ANKRD20A8PQ5CZ79 823 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 STYK1Q6J9G0 422 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 SPATA21Q7Z572 469 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 MCOLN2Q8IZK6 566 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 OR5B17Q8NGF7 314 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 UBA3Q8TBC4 463 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 SEPT10Q9P0V9 454 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 IGF2BP3O00425 579 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 GBP1P32455 592 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 AUHQ13825 339 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 BTNL9Q6UXG8 535 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 SCYL3Q8IZE3 742 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 TMEM35BQ8NCS4 154 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 MBOAT7Q96N66 472 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 MTFR1LQ9H019 292 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 MIS12Q9H081 205 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 C12orf65Q9H3J6 166 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 DNPEPQ9ULA0 475 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 ECM29Q5VYK3 1845 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 ZNF862O60290 1169 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 HIRAP54198 1017 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 TMEM62Q0P6H9 643 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 SLC15A2Q16348 729 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 HADHQ16836 314 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 CLEC16AQ2KHT3 1053 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 ANKRD20A3Q5VUR7 823 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 FYB2Q5VWT5 728 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 MFSD7Q6UXD7 560 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 FAM71AQ8IYT1 594 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 VPS52Q8N1B4 723 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 MCUR1Q96AQ8 359 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 ERP27Q96DN0 273 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 OTUD5Q96G74 571 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 CFAP57Q96MR6 1250 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 RILPQ96NA2 401 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 TRAIPQ9BWF2 469 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 SLC13A1Q9BZW2 595 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 FHDC1Q9C0D6 1143 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 TRABDQ9H4I3 376 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 CHMP2BQ9UQN3 213 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 NAALADL1Q9UQQ1 740 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 PCDHA3Q9Y5H8 950 aa12.86□□□□□ -0.35
CCDC88C-211ENST00000556726 CST8O60676 142 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 TJP3O95049 919 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 ATP2A2P16615 1042 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 SAT1P21673 171 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 MSH2P43246 934 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 STAT5BP51692 787 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 CUL2Q13617 745 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 SPRED3Q2MJR0 410 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 DALRD3Q5D0E6 543 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 ACAD9Q9H845 621 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms