RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ZXDAP98168 799 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 TSHZ3Q63HK5 1081 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 DENND1CQ8IV53 801 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 SLC35G2Q8TBE7 412 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 TBC1D15Q8TC07 691 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 NUP133Q8WUM0 1156 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 TSR2Q969E8 191 aaKnown RBP5.91□□□□□ -1.46
SCFD1-221ENST00000556534 MYEOVQ96EZ4 313 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 CGRRF1Q99675 332 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 ADAM2Q99965 735 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 REXO4Q9GZR2 422 aaKnown RBP5.91□□□□□ -1.46
SCFD1-221ENST00000556534 RNPEPQ9H4A4 650 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 WDCPQ9H6R7 721 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 SIDT1Q9NXL6 827 aaKnown RBP5.91□□□□□ -1.46
SCFD1-221ENST00000556534 GABBR1Q9UBS5 961 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 DKK2Q9UBU2 259 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 USP25Q9UHP3 1055 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 FEZ2Q9UHY8 353 aaPredicted RBP5.91□□□□□ -1.46
SCFD1-221ENST00000556534 FZD1Q9UP38 647 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 ATP11BQ9Y2G3 1177 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 NR2E3Q9Y5X4 410 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 HS3ST4Q9Y661 456 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 FPGT-TNNI3KV9GXZ4 949 aa5.91□□□□□ -1.46
SCFD1-221ENST00000556534 AGFG2O95081 481 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 CKBP12277 381 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 PTGS2P35354 604 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 NKX6-1P78426 367 aaPredicted RBP5.9□□□□□ -1.46
SCFD1-221ENST00000556534 CCDC93Q567U6 631 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 MRGPREQ86SM8 312 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 MAPKAPK5Q8IW41 473 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 ZBTB34Q8NCN2 500 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 TMIEQ8NEW7 156 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 PPP1R35Q8TAP8 253 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 FAM167AQ96KS9 214 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 KLHL32Q96NJ5 620 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 ACO2Q99798 780 aaKnown RBP5.9□□□□□ -1.46
SCFD1-221ENST00000556534 C1orf43Q9BWL3 253 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 TLR10Q9BXR5 811 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 MMRN2Q9H8L6 949 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 HSFX1Q9UBD0 423 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 STXBP5LQ9Y2K9 1186 aa5.9□□□□□ -1.46
SCFD1-221ENST00000556534 REXO2Q9Y3B8 237 aaKnown RBP5.9□□□□□ -1.46
SCFD1-221ENST00000556534 AATKQ6ZMQ8 1374 aa5.9□□□□□ -1.47
SCFD1-221ENST00000556534 PRSS29PA6NIE9 313 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 TMEM200CA6NKL6 621 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 MATN4O95460 622 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 U2AF1L5P0DN76 240 aaPredicted RBP5.89□□□□□ -1.47
SCFD1-221ENST00000556534 LAG3P18627 525 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 SMARCA1P28370 1054 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 PIK3CGP48736 1102 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 U2AF1Q01081 240 aaKnown RBP eCLIP5.89□□□□□ -1.47
SCFD1-221ENST00000556534 MLC1Q15049 377 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 UTP14CQ5TAP6 766 aaKnown RBP5.89□□□□□ -1.47
SCFD1-221ENST00000556534 B3GNTL1Q67FW5 361 aaPredicted RBP5.89□□□□□ -1.47
SCFD1-221ENST00000556534 PLBD2Q8NHP8 589 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 HAS1Q92839 578 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 MARS2Q96GW9 593 aaKnown RBP5.89□□□□□ -1.47
SCFD1-221ENST00000556534 CDK5RAP3Q96JB5 506 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 LRFN3Q9BTN0 628 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 MLST8Q9BVC4 326 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 RLIMQ9NVW2 624 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 MAP3K2Q9Y2U5 619 aa5.89□□□□□ -1.47
SCFD1-221ENST00000556534 CENPVL1A0A0U1RR11 272 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 B3GALT2O43825 422 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 LPXNO60711 386 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 UBXN7O94888 489 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 NDUFA10O95299 355 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 BMPR1AP36894 532 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 HSD11B2P80365 405 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 PLS1Q14651 629 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 OVCH2Q7RTZ1 564 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 PPP1R3BQ86XI6 285 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 SYNE4Q8N205 404 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 CAMKK1Q8N5S9 505 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 CPEB3Q8NE35 698 aaKnown RBP5.88□□□□□ -1.47
SCFD1-221ENST00000556534 KLHDC4Q8TBB5 520 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 SLC35A4Q96G79 324 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 MRPL46Q9H2W6 279 aaKnown RBP5.88□□□□□ -1.47
SCFD1-221ENST00000556534 PNPOQ9NVS9 261 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 VSX1Q9NZR4 365 aaPredicted RBP5.88□□□□□ -1.47
SCFD1-221ENST00000556534 KCNE5Q9UJ90 142 aa5.88□□□□□ -1.47
SCFD1-221ENST00000556534 E9PLN8 166 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 FZD7O75084 574 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 PPFIA4O75335 1185 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 ZFPL1O95159 310 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 ANXA1P04083 346 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 GJB1P08034 283 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 MYBP10242 640 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 MAKP20794 623 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 DDX6P26196 483 aaKnown RBP eCLIP5.87□□□□□ -1.47
SCFD1-221ENST00000556534 HTR1BP28222 390 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 RAB1AP62820 205 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 CXADRP78310 365 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 ABHD18Q0P651 414 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 KIF22Q14807 665 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 MINDY4Q4G0A6 757 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 TIGD2Q4W5G0 525 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 PDSS2Q86YH6 399 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 MYO1HQ8N1T3 1032 aa5.87□□□□□ -1.47
SCFD1-221ENST00000556534 TMEM132CQ8N3T6 1108 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms