RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 CNGA2Q16280 664 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 CSRP2Q16527 193 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 LONRF1Q17RB8 773 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 TBC1D10BQ4KMP7 808 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-205ENST00000550592 TCTN3Q6NUS6 607 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 DRICH1Q6PGQ1 229 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-205ENST00000550592 UBE3BQ7Z3V4 1068 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 DPP9Q86TI2 863 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 PDSS2Q86YH6 399 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 FAM186BQ8IYM0 893 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 SPICE1Q8N0Z3 855 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 CELF5Q8N6W0 485 aaKnown RBP6.05□□□□□ -1.44
LIMA1-205ENST00000550592 GIMAP8Q8ND71 665 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-205ENST00000550592 ZFP28Q8NHY6 868 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 FEZF2Q8TBJ5 459 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 KBTBD7Q8WVZ9 684 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 TNPO1Q92973 898 aaKnown RBP6.05□□□□□ -1.44
LIMA1-205ENST00000550592 PGBD4Q96DM1 585 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 TMEM176AQ96HP8 235 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 SUCLG2Q96I99 432 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 PACSIN1Q9BY11 444 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 XYLT2Q9H1B5 865 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 NLRC4Q9NPP4 1024 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-205ENST00000550592 CLCA2Q9UQC9 943 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 HDAC5Q9UQL6 1122 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 MED16Q9Y2X0 877 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 SH3BP1Q9Y3L3 701 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 SLC30A1Q9Y6M5 507 aa6.05□□□□□ -1.44
LIMA1-205ENST00000550592 NPEPPSL1A6NEC2 478 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 PLEKHD1A6NEE1 506 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 RHPN2P1A8MT19 583 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 TBX3O15119 743 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 MFAP3LO75121 409 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 PLATP00750 562 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 GJB1P08034 283 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 GNAI3P08754 354 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 ALAS1P13196 640 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 ZKSCAN1P17029 563 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-205ENST00000550592 GNAT2P19087 354 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 SERPINB3P29508 390 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 CASP5P51878 434 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 GNAI1P63096 354 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 FOXL1Q12952 345 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 ATXN7L2Q5T6C5 722 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-205ENST00000550592 SRLQ86TD4 932 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 MDGA1Q8NFP4 955 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 OR52N2Q8NGI0 321 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 MORC4Q8TE76 937 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 ST8SIA2Q92186 375 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 TFAP2CQ92754 450 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 CCDC138Q96M89 665 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 OR14A2Q96R54 314 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 CPPED1Q9BRF8 314 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-205ENST00000550592 TRIM54Q9BYV2 358 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 DPH1Q9BZG8 443 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 GSTO2Q9H4Y5 243 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 BRD9Q9H8M2 597 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 ZNF287Q9HBT7 754 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 FBXO34Q9NWN3 711 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 CFAP97Q9P2B7 532 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 SPATA31D1Q6ZQQ2 1576 aa6.04□□□□□ -1.44
LIMA1-205ENST00000550592 ABCC10Q5T3U5 1492 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 ZNF536O15090 1300 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 MROH2BQ7Z745 1585 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 OTOL1A6NHN0 477 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-205ENST00000550592 PRR5-ARHGAP8B1AHC4 643 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 HAUS5O94927 633 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 ANXA1P04083 346 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 PRIM2P49643 509 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 SUMO3P55854 103 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-205ENST00000550592 RAP2BP61225 183 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 EXOSC9Q06265 439 aaKnown RBP6.03□□□□□ -1.44
LIMA1-205ENST00000550592 LONRF3Q496Y0 759 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 EFCAB12Q6NXP0 572 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 LCNL1Q6ZST4 164 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 ZNF365Q70YC5 407 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 ELOA2Q8IYF1 753 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-205ENST00000550592 FUKQ8N0W3 1084 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 MSLNLQ96KJ4 702 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 P2RX7Q99572 595 aaKnown RBP6.03□□□□□ -1.44
LIMA1-205ENST00000550592 CPEB1Q9BZB8 566 aaKnown RBP6.03□□□□□ -1.44
LIMA1-205ENST00000550592 UNKQ9C0B0 810 aaKnown RBP6.03□□□□□ -1.44
LIMA1-205ENST00000550592 GPR35Q9HC97 309 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-205ENST00000550592 FNIP2Q9P278 1114 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 CPNE7Q9UBL6 633 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 TAGLN3Q9UI15 199 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 OGDHLQ9ULD0 1010 aa6.03□□□□□ -1.44
LIMA1-205ENST00000550592 ZFR2Q9UPR6 939 aaKnown RBP6.03□□□□□ -1.44
LIMA1-205ENST00000550592 RASA4BC9J798 803 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 GPR42O15529 346 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 RASA4O43374 803 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 FOXS1O43638 330 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 EIF3JO75822 258 aaKnown RBP6.02□□□□□ -1.45
LIMA1-205ENST00000550592 IPO13O94829 963 aaKnown RBP6.02□□□□□ -1.45
LIMA1-205ENST00000550592 RARBP10826 455 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 BRAFP15056 766 aa6.02□□□□□ -1.45
LIMA1-205ENST00000550592 MSX2P35548 267 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-205ENST00000550592 NOMO3P69849 1222 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms