RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 CAPN12Q6ZSI9 719 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 MON1BQ7L1V2 547 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 GSTA5Q7RTV2 222 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 CCDC60Q8IWA6 550 aaPredicted RBP16.8■□□□□ 0.28
LDLR-204ENST00000545707 SPIRE2Q8WWL2 714 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 FNBP1Q96RU3 617 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 PAIP2Q9BPZ3 127 aaKnown RBP16.8■□□□□ 0.28
LDLR-204ENST00000545707 OSBPL8Q9BZF1 889 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 HAPLN2Q9GZV7 340 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 ADAM22Q9P0K1 906 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 TRIM33Q9UPN9 1127 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 NEU2Q9Y3R4 380 aa16.8■□□□□ 0.28
LDLR-204ENST00000545707 GSTTP1A0A1W2PQM5 241 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 VNN1O95497 513 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 NR3C2P08235 984 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 ETS1P14921 441 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 GTF2H1P32780 548 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 MTERF2Q49AM1 385 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 BRDTQ58F21 947 aaPredicted RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 WDR44Q5JSH3 913 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 C15orf39Q6ZRI6 1047 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 SAMD3Q8N6K7 520 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 SLC17A8Q8NDX2 589 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 TMEM143Q96AN5 459 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 ACSF2Q96CM8 615 aaPredicted RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 MRRFQ96E11 262 aaKnown RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 TGS1Q96RS0 853 aaKnown RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 FHDC1Q9C0D6 1143 aaPredicted RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 POLR3FQ9H1D9 316 aaPredicted RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 RPAP3Q9H6T3 665 aaPredicted RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 ECT2Q9H8V3 914 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 AVENQ9NQS1 362 aaPredicted RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 PCDHB4Q9Y5E5 795 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 RGS20O76081 388 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 CYP1A1P04798 512 aaPredicted RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 STX2P32856 288 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 LIG4P49917 911 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 NCALDP61601 193 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 CENPCQ03188 943 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 MAMLD1Q13495 774 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 P3H1Q32P28 736 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 TMEM63BQ5T3F8 832 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 CGB2Q6NT52 195 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 USP37Q86T82 979 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 FAM83AQ86UY5 434 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 GRK7Q8WTQ7 553 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 CKAP2Q8WWK9 683 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 MYCBPQ99417 103 aaPredicted RBP16.79■□□□□ 0.28
LDLR-204ENST00000545707 ZNF541Q9H0D2 1346 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 LOXHD1Q8IVV2 1947 aa16.79■□□□□ 0.28
LDLR-204ENST00000545707 ACO1P21399 889 aaKnown RBP16.78■□□□□ 0.28
LDLR-204ENST00000545707 SLC1A1P43005 524 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 RPL7AP62424 266 aaKnown RBP16.78■□□□□ 0.28
LDLR-204ENST00000545707 GHRHRQ02643 423 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 FAM47EQ6ZV65 393 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 VSIG10LQ86VR7 867 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 FITM2Q8N6M3 262 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 RMDN2Q96LZ7 410 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 PDGFDQ9GZP0 370 aaPredicted RBP16.78■□□□□ 0.28
LDLR-204ENST00000545707 RNF146Q9NTX7 359 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 L3MBTL1Q9Y468 752 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.78■□□□□ 0.28
LDLR-204ENST00000545707 TLR3O15455 904 aaKnown RBP16.78■□□□□ 0.28
LDLR-204ENST00000545707 SPAG7O75391 227 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 C4BPAP04003 597 aaKnown RBP16.78■□□□□ 0.28
LDLR-204ENST00000545707 GSTA1P08263 222 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 HARSP12081 509 aaKnown RBP16.78■□□□□ 0.28
LDLR-204ENST00000545707 PRKCEQ02156 737 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 TMED2Q15363 201 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 ZACNQ401N2 412 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 ACCSLQ4AC99 568 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 WLSQ5T9L3 541 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 ENOSF1Q7L5Y1 443 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 RHOT1Q8IXI2 618 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 MAIP1Q8WWC4 291 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 HAUS1Q96CS2 278 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 RBM15Q96T37 977 aaKnown RBP eCLIP16.78■□□□□ 0.289e-8■■■■□ 21.6
LDLR-204ENST00000545707 FZD1Q9UP38 647 aa16.78■□□□□ 0.28
LDLR-204ENST00000545707 A8MUI8 341 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 SUN1O94901 812 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 GARTP22102 1010 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 GNA15P30679 374 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 FOXN2P32314 431 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 NOMO3P69849 1222 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 FASTKD3Q14CZ7 662 aaKnown RBP16.77■□□□□ 0.28
LDLR-204ENST00000545707 SPATA21Q7Z572 469 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 PRCCQ92733 491 aaPredicted RBP16.77■□□□□ 0.28
LDLR-204ENST00000545707 KIAA1683Q9H0B3 1180 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 PDLIM7Q9NR12 457 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 CYP26B1Q9NR63 512 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 ANKFY1Q9P2R3 1169 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 DNPEPQ9ULA0 475 aa16.77■□□□□ 0.28
LDLR-204ENST00000545707 IGF2BP3O00425 579 aaKnown RBP eCLIP16.77■□□□□ 0.27
LDLR-204ENST00000545707 VWA5AO00534 786 aa16.77■□□□□ 0.27
LDLR-204ENST00000545707 EXTL3O43909 919 aa16.77■□□□□ 0.27
LDLR-204ENST00000545707 ZBED4O75132 1171 aa16.77■□□□□ 0.27
LDLR-204ENST00000545707 KCNA2P16389 499 aa16.77■□□□□ 0.27
LDLR-204ENST00000545707 ATF7P17544 494 aaPredicted RBP16.77■□□□□ 0.27
LDLR-204ENST00000545707 MGAT5Q09328 741 aa16.77■□□□□ 0.27
LDLR-204ENST00000545707 CCNG2Q16589 344 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms