RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SNTG2Q9NY99 539 aa5.32□□□□□ -1.56
LIMS1-214ENST00000542845 CDY1Q9Y6F8 540 aa5.32□□□□□ -1.56
LIMS1-214ENST00000542845 CEP295Q9C0D2 2601 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 WDR27A2RRH5 827 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 HEPACAM2A8MVW5 462 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 WDR64B1ANS9 1081 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 E7EWF7 191 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 PYCARD-AS1I3L0S3 204 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 ZNF197O14709 1029 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 MEFVO15553 781 aaPredicted RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 ERLIN2O94905 339 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 PAPSS2O95340 614 aaPredicted RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 PLA2G2AP14555 144 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 HOXA11P31270 313 aaPredicted RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 CCR2P41597 374 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 DHPSP49366 369 aaPredicted RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 GNAQP50148 359 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 FAM193AP78312 1265 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 NCBP1Q09161 790 aaKnown RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 KCNH2Q12809 1159 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 PRR16Q569H4 304 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 WWC2Q6AWC2 1192 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 TTC30AQ86WT1 665 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 ELMOD1Q8N336 334 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 CNNM3Q8NE01 707 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 NCOA7Q8NI08 942 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 ZSCAN18Q8TBC5 510 aaPredicted RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 PRPF31Q8WWY3 499 aaKnown RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 PIK3R5Q8WYR1 880 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 SMARCD2Q92925 531 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 GJA10Q969M2 543 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 TMEM143Q96AN5 459 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 HNRNPABQ99729 332 aaKnown RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 GTPBP2Q9BX10 602 aaKnown RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 TPSD1Q9BZJ3 242 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 C8orf33Q9H7E9 229 aaPredicted RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 IFT122Q9HBG6 1241 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 CYP4F11Q9HBI6 524 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 RIC8AQ9NPQ8 531 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 GTSE1Q9NYZ3 720 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 DACH1Q9UI36 760 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 TSR3Q9UJK0 312 aaKnown RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 DOLKQ9UPQ8 538 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 RAI2Q9Y5P3 530 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 COL4A3BPQ9Y5P4 624 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 DSPP15924 2871 aaKnown RBP5.31□□□□□ -1.56
LIMS1-214ENST00000542845 VWA8A3KMH1 1905 aa5.31□□□□□ -1.56
LIMS1-214ENST00000542845 SALL3Q9BXA9 1300 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 IGLV3-22A0A075B6J6 115 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 H0Y626 953 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 I3L4J1 428 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 INO80B-WBP1J3KQ70 363 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 ATG13O75143 517 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 MAFO75444 373 aaPredicted RBP5.3□□□□□ -1.56
LIMS1-214ENST00000542845 DDAH1O94760 285 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 KIF4AO95239 1232 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 TRIM16O95361 564 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 NPTXRO95502 500 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 CAPNS1P04632 268 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 SMARCA1P28370 1054 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 HOXA6P31267 233 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 SREBF1P36956 1147 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 ATP1A2P50993 1020 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 ATXN3P54252 364 aaPredicted RBP5.3□□□□□ -1.56
LIMS1-214ENST00000542845 TNK2Q07912 1038 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 PSMD2Q13200 908 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 RAB33AQ14088 237 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 TEAD2Q15562 447 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 TARBP2Q15633 366 aaKnown RBP5.3□□□□□ -1.56
LIMS1-214ENST00000542845 TRIM61Q5EBN2 209 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 XKR3Q5GH77 459 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 PRSS36Q5K4E3 855 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 PLA2G4FQ68DD2 849 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 IQCEQ6IPM2 695 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 CASC1Q6TDU7 716 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 ARMCX6Q7L4S7 300 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 NIPA1Q7RTP0 329 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 MIER3Q7Z3K6 550 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 CYP2U1Q7Z449 544 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 HAUS6Q7Z4H7 955 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 SRGAP1Q7Z6B7 1085 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 RALGPS2Q86X27 583 aaPredicted RBP5.3□□□□□ -1.56
LIMS1-214ENST00000542845 ANKMY2Q8IV38 441 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 HACE1Q8IYU2 909 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 IGDCC4Q8TDY8 1250 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 DEPDC1BQ8WUY9 529 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 WNT2BQ93097 391 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 ZNF512Q96ME7 567 aaPredicted RBP5.3□□□□□ -1.56
LIMS1-214ENST00000542845 SPSB2Q99619 263 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 NUSAP1Q9BXS6 441 aaKnown RBP5.3□□□□□ -1.56
LIMS1-214ENST00000542845 UNC45AQ9H3U1 944 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 NXF3Q9H4D5 531 aaKnown RBP5.3□□□□□ -1.56
LIMS1-214ENST00000542845 TRPV5Q9NQA5 729 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 FSCN3Q9NQT6 498 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 PRDM9Q9NQV7 894 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 CACNA2D2Q9NY47 1150 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 TAF6LQ9Y6J9 622 aa5.3□□□□□ -1.56
LIMS1-214ENST00000542845 FLNBO75369 2602 aaKnown RBP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 NCANO14594 1321 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 ABCA7Q8IZY2 2146 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms