RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 ZNF516Q92618 1163 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 SYN2Q92777 582 aaPredicted RBP11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 LPPQ93052 612 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 JAKMIP2Q96AA8 810 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 UROC1Q96N76 676 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 MMS19Q96T76 1030 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 GAD1Q99259 594 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 DNAJC7Q99615 494 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 LBHD1Q9BQE6 289 aaPredicted RBP11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 MRPL9Q9BYD2 267 aaKnown RBP11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 TTYH3Q9C0H2 523 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 WNT8AQ9H1J5 351 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 PDCL3Q9H2J4 239 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 MTIF3Q9H2K0 278 aaKnown RBP11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 TMX1Q9H3N1 280 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 ELAC1Q9H777 363 aaKnown RBP11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 SEPT11Q9NVA2 429 aaKnown RBP11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 NXF1Q9UBU9 619 aaKnown RBP11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 NUB1Q9Y5A7 615 aa11.03□□□□□ -0.64
PRPF38A-202ENST00000474048 CEP350Q5VT06 3117 aa11.02□□□□□ -0.64
PRPF38A-202ENST00000474048 C9IYK1 514 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 F8VZ95 297 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 KIAA0355O15063 1070 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 AKR1B10O60218 316 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 GFPT2O94808 682 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 ASS1P00966 412 aaKnown RBP11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 CXCL10P02778 98 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 TAF6P49848 677 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 SCNN1GP51170 649 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 WNT7BP56706 349 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 WDR72Q3MJ13 1102 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 MFSD5Q6N075 450 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 GJB7Q6PEY0 223 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 NPAS4Q8IUM7 802 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 ARHGEF19Q8IW93 802 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 HELQQ8TDG4 1101 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 SEMA4DQ92854 862 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 DDX27Q96GQ7 796 aaKnown RBP11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 FAXDC2Q96IV6 333 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 ZFP42Q96MM3 310 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 SIX2Q9NPC8 291 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 TUBGCP4Q9UGJ1 667 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 PLAGL2Q9UPG8 496 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 PCDHB4Q9Y5E5 795 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 TRIP11Q15643 1979 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 SCN5AQ14524 2016 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 HTTP42858 3142 aa11.02□□□□□ -0.65
PRPF38A-202ENST00000474048 KIAA0100Q14667 2235 aaKnown RBP11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 ABHD14A-ACY1A0A1B0GW23 586 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 ZBBXA8MT70 800 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 EPHB6O15197 1021 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 ZSCAN12O43309 604 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 HUS1O60921 280 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 NOL4O94818 638 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 VNN1O95497 513 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 POMCP01189 267 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 CD58P19256 250 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 PAX3P23760 479 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 RPL9P32969 192 aaKnown RBP11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 KRT83P78385 493 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 APBA1Q02410 837 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 PTK2Q05397 1052 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 FPGSQ05932 587 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 ARID5BQ14865 1188 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 NOMO2Q5JPE7 1267 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 SPOPLQ6IQ16 392 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 PHLDB3Q6NSJ2 640 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 ALKAL1Q6UXT8 129 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 DSTYKQ6XUX3 929 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 AGMOQ6ZNB7 445 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 CCDC170Q8IYT3 715 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 BAP1Q92560 729 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 DPF3Q92784 378 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 C18orf25Q96B23 403 aaPredicted RBP11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 ZNF830Q96NB3 372 aaPredicted RBP11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 PUF60Q9UHX1 559 aaKnown RBP11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 ZKSCAN5Q9Y2L8 839 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 CEP83Q9Y592 693 aa11.01□□□□□ -0.65
PRPF38A-202ENST00000474048 CASTOR2A6NHX0 329 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 CCDC85CA6NKD9 419 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 PODXLO00592 558 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 ENPP3O14638 875 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 BAIAP3O94812 1187 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 UPP2O95045 317 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 STAU1O95793 577 aaKnown RBP11□□□□□ -0.65
PRPF38A-202ENST00000474048 CST3P01034 146 aaPredicted RBP11□□□□□ -0.65
PRPF38A-202ENST00000474048 CCDC175P0C221 793 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 CSF2RAP15509 400 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 ANXA13P27216 316 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 GUCY2FP51841 1108 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 CDK17Q00537 523 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 TUSC3Q13454 348 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 XKR4Q5GH76 650 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 SPOUT1Q5T280 376 aaKnown RBP11□□□□□ -0.65
PRPF38A-202ENST00000474048 C9orf57Q5W0N0 161 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 SMYD5Q6GMV2 418 aa11□□□□□ -0.65
PRPF38A-202ENST00000474048 PSRC1Q6PGN9 363 aaPredicted RBP11□□□□□ -0.65
PRPF38A-202ENST00000474048 KIAA1328Q86T90 577 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms