RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 WDR93Q6P2C0 686 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 SAMD7Q7Z3H4 446 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 PSD3Q9NYI0 1048 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 PHF2O75151 1096 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 GH1P01241 217 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 COMTP21964 271 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 NSUN2Q08J23 767 aaKnown RBP eCLIP12.13□□□□□ -0.47
NOD1-201ENST00000222823 GRB10Q13322 594 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 PIGHQ14442 188 aaPredicted RBP12.13□□□□□ -0.47
NOD1-201ENST00000222823 HABP4Q5JVS0 413 aaKnown RBP12.13□□□□□ -0.47
NOD1-201ENST00000222823 FRA10AC1Q70Z53 315 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 NOP9Q86U38 636 aaKnown RBP12.13□□□□□ -0.47
NOD1-201ENST00000222823 SH2D3CQ8N5H7 860 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 PIP4K2CQ8TBX8 421 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 ACER1Q8TDN7 264 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 PNKPQ96T60 521 aa12.13□□□□□ -0.47
NOD1-201ENST00000222823 C6orf222P0C671 652 aaPredicted RBP12.12□□□□□ -0.47
NOD1-201ENST00000222823 EEF1B2P24534 225 aaKnown RBP12.12□□□□□ -0.47
NOD1-201ENST00000222823 SNRPFP62306 86 aaKnown RBP12.12□□□□□ -0.47
NOD1-201ENST00000222823 CENPPQ6IPU0 288 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 ANKMY2Q8IV38 441 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 GRAMD1AQ96CP6 724 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 PRMT6Q96LA8 375 aaPredicted RBP12.12□□□□□ -0.47
NOD1-201ENST00000222823 TAAR1Q96RJ0 339 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 RAB6BQ9NRW1 208 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 SMARCAL1Q9NZC9 954 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 KCNN4O15554 427 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 SLC25A27O95847 323 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 LCA5Q86VQ0 697 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 LRRC71Q8N4P6 559 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 AGBL3Q8NEM8 1001 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 GANCQ8TET4 914 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 GIPC2Q8TF65 315 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 RAPGEF5Q92565 580 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 ULK4Q96C45 1275 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 MCEEQ96PE7 176 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 SARS2Q9NP81 518 aaKnown RBP12.12□□□□□ -0.47
NOD1-201ENST00000222823 AGPAT3Q9NRZ7 376 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 KRT82Q9NSB4 513 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 POLLQ9UGP5 575 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 CCDC195A0A1B0GUA6 201 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 IER5Q5VY09 327 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 TRMT10CQ7L0Y3 403 aaKnown RBP12.12□□□□□ -0.47
NOD1-201ENST00000222823 SYN2Q92777 582 aaPredicted RBP12.12□□□□□ -0.47
NOD1-201ENST00000222823 TRABDQ9H4I3 376 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 SMYD3Q9H7B4 428 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 STOML1Q9UBI4 398 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 FAM8A1Q9UBU6 413 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 TRIM33Q9UPN9 1127 aa12.12□□□□□ -0.47
NOD1-201ENST00000222823 TRAPPC3O43617 180 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 AGTP01019 485 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 LMNAP02545 664 aaKnown RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 PDGFRBP09619 1106 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 TPI1P60174 286 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 SNAPC2Q13487 334 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 PAPD7Q5XG87 772 aaKnown RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 CHST13Q8NET6 341 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 APPL2Q8NEU8 664 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 ADAM33Q9BZ11 813 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 TRIM4Q9C037 500 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 GOLPH3Q9H4A6 298 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 SUDS3Q9H7L9 328 aaPredicted RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 PRMT7Q9NVM4 692 aaPredicted RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 L1RE1Q9UN81 338 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 WTIPA6NIX2 430 aaPredicted RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 WEE2P0C1S8 567 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 HSPA9P38646 679 aaKnown RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 NNMTP40261 264 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 PMS1P54277 932 aaKnown RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 P3H1Q32P28 736 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 EPC2Q52LR7 807 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 ATF7IP2Q5U623 682 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 C1orf146Q5VVC0 180 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 TMEM139Q8IV31 216 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 CCDC124Q96CT7 223 aaKnown RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 PGBD4Q96DM1 585 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 AGAP3Q96P47 875 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 NT5C1AQ9BXI3 368 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 MRPL46Q9H2W6 279 aaKnown RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 RIOX1Q9H6W3 641 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 C5P01031 1676 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 CFAP69A5D8W1 941 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 HBP1O60381 514 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 DPEP1P16444 411 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 RPS12P25398 132 aaKnown RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 KCNJ1P48048 391 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 FASTKD1Q53R41 847 aaKnown RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 JAMLQ86YT9 394 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 RNF135Q8IUD6 432 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 RDM1Q8NG50 284 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 RIN2Q8WYP3 895 aaPredicted RBP12.11□□□□□ -0.47
NOD1-201ENST00000222823 TNFRSF25Q93038 417 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 ASIC4Q96FT7 647 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 PI4K2AQ9BTU6 479 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 C17orf75Q9HAS0 396 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 ERAP1Q9NZ08 941 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 A0A087X0T9 212 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 GOLGA8RI6L899 631 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 NEMP1O14524 444 aa12.11□□□□□ -0.47
NOD1-201ENST00000222823 FAM228BP0C875 321 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms