RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ASB2Q96Q27 587 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 PCIF1Q9H4Z3 704 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 KIAA1586Q9HCI6 787 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 CHST7Q9NS84 486 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 A0A0C4DFX4 3053 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 KINO60870 393 aaKnown RBP22.48■■□□□ 1.19
CLN3-240ENST00000631023 KCNB1Q14721 858 aa22.48■■□□□ 1.19
CLN3-240ENST00000631023 TMEM132DQ14C87 1099 aa22.48■■□□□ 1.19
CLN3-240ENST00000631023 KIAA0319Q5VV43 1072 aa22.48■■□□□ 1.19
CLN3-240ENST00000631023 JADE1Q6IE81 842 aa22.48■■□□□ 1.19
CLN3-240ENST00000631023 PPFIBP1Q86W92 1011 aa22.48■■□□□ 1.19
CLN3-240ENST00000631023 KIAA0895Q8NCT3 520 aa22.48■■□□□ 1.19
CLN3-240ENST00000631023 BEST2Q8NFU1 509 aa22.48■■□□□ 1.19
CLN3-240ENST00000631023 GOLGA5Q8TBA6 731 aa22.48■■□□□ 1.19
CLN3-240ENST00000631023 NOC3LQ8WTT2 800 aaKnown RBP22.48■■□□□ 1.19
CLN3-240ENST00000631023 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.48■■□□□ 1.19
CLN3-240ENST00000631023 NUB1Q9Y5A7 615 aa22.48■■□□□ 1.19
CLN3-240ENST00000631023 LINC01565O15544 149 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 TGFB1I1O43294 461 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 LILRB3O75022 631 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 LTBRP36941 435 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 LEXMQ3ZCV2 418 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 PDXDC1Q6P996 788 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 NT5DC4Q86YG4 428 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 TTPALQ9BTX7 342 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 AGPAT3Q9NRZ7 376 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 RBAKQ9NYW8 714 aaPredicted RBP22.47■■□□□ 1.19
CLN3-240ENST00000631023 TUBGCP4Q9UGJ1 667 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 C2CD2Q9Y426 696 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 XIRP2A4UGR9 3374 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 NCOR1O75376 2440 aa22.47■■□□□ 1.19
CLN3-240ENST00000631023 GOLGA8IPA6NC78 632 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 GOLGA8JA6NMD2 632 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 TULP1O00294 542 aaPredicted RBP22.46■■□□□ 1.19
CLN3-240ENST00000631023 CLASP2O75122 1294 aaKnown RBP22.46■■□□□ 1.19
CLN3-240ENST00000631023 GADD45BO75293 160 aaPredicted RBP22.46■■□□□ 1.19
CLN3-240ENST00000631023 SMC2O95347 1197 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 KLRC2P26717 231 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 LRPAP1P30533 357 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 UBE2HP62256 183 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 CREMQ03060 361 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 SPATA1Q5VX52 437 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 TMEM184AQ6ZMB5 413 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 CEP57Q86XR8 500 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 BRSK2Q8IWQ3 736 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 RIN2Q8WYP3 895 aaPredicted RBP22.46■■□□□ 1.19
CLN3-240ENST00000631023 RMND1Q9NWS8 449 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 HSPBP1Q9NZL4 362 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 SCN1AP35498 2009 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 ZNF233A6NK53 670 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 H3BQ06 376 aaPredicted RBP22.46■■□□□ 1.19
CLN3-240ENST00000631023 ADH1AP07327 375 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 CNPP09543 421 aaKnown RBP22.46■■□□□ 1.19
CLN3-240ENST00000631023 PNOCQ13519 176 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 PUS10Q3MIT2 529 aaKnown RBP22.46■■□□□ 1.19
CLN3-240ENST00000631023 TJAP1Q5JTD0 557 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.46■■□□□ 1.19
CLN3-240ENST00000631023 ELOA2Q8IYF1 753 aaPredicted RBP22.46■■□□□ 1.19
CLN3-240ENST00000631023 C3orf58Q8NDZ4 430 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 KLHL5Q96PQ7 755 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 RXFP1Q9HBX9 757 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 TSHZ2Q9NRE2 1034 aa22.46■■□□□ 1.19
CLN3-240ENST00000631023 CLIC2O15247 247 aa22.45■■□□□ 1.18
CLN3-240ENST00000631023 NFICP08651 508 aa22.45■■□□□ 1.18
CLN3-240ENST00000631023 DLX2Q07687 328 aaPredicted RBP22.45■■□□□ 1.18
CLN3-240ENST00000631023 LLGL2Q6P1M3 1020 aa22.45■■□□□ 1.18
CLN3-240ENST00000631023 ZSWIM2Q8NEG5 633 aa22.45■■□□□ 1.18
CLN3-240ENST00000631023 CASP10Q92851 521 aa22.45■■□□□ 1.18
CLN3-240ENST00000631023 B3GALT6Q96L58 329 aa22.45■■□□□ 1.18
CLN3-240ENST00000631023 GSDMAQ96QA5 445 aa22.45■■□□□ 1.18
CLN3-240ENST00000631023 FAM50BQ9Y247 325 aa22.45■■□□□ 1.18
CLN3-240ENST00000631023 HCFC2Q9Y5Z7 792 aa22.45■■□□□ 1.18
CLN3-240ENST00000631023 TBX10O75333 385 aa22.44■■□□□ 1.18
CLN3-240ENST00000631023 GLP2RO95838 553 aa22.44■■□□□ 1.18
CLN3-240ENST00000631023 FGFR3P22607 806 aa22.44■■□□□ 1.18
CLN3-240ENST00000631023 KCNC3Q14003 757 aa22.44■■□□□ 1.18
CLN3-240ENST00000631023 SURF1Q15526 300 aa22.44■■□□□ 1.18
CLN3-240ENST00000631023 CD300LGQ6UXG3 332 aa22.44■■□□□ 1.18
CLN3-240ENST00000631023 C12orf56Q8IXR9 622 aa22.44■■□□□ 1.18
CLN3-240ENST00000631023 XXYLT1Q8NBI6 393 aa22.44■■□□□ 1.18
CLN3-240ENST00000631023 CACTINQ8WUQ7 758 aaKnown RBP22.44■■□□□ 1.18
CLN3-240ENST00000631023 FNIP2Q9P278 1114 aa22.44■■□□□ 1.18
CLN3-240ENST00000631023 PRPF40AO75400 957 aaKnown RBP22.43■■□□□ 1.18
CLN3-240ENST00000631023 PAX3P23760 479 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 MCM4P33991 863 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 CYP2J2P51589 502 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 PLXNA3P51805 1871 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 RTP2Q5QGT7 225 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 VN1R2Q8NFZ6 395 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 PIK3R5Q8WYR1 880 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 SMARCE1Q969G3 411 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 GTPBP4Q9BZE4 634 aaKnown RBP22.43■■□□□ 1.18
CLN3-240ENST00000631023 CLEC1BQ9P126 229 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 CD207Q9UJ71 328 aa22.43■■□□□ 1.18
CLN3-240ENST00000631023 BARX2Q9UMQ3 279 aaPredicted RBP22.43■■□□□ 1.18
CLN3-240ENST00000631023 SPTBN5Q9NRC6 3674 aaKnown RBP22.43■■□□□ 1.18
CLN3-240ENST00000631023 PDXKO00764 312 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 TEX28O15482 410 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 HOXB8P17481 243 aaPredicted RBP22.42■■□□□ 1.18
CLN3-240ENST00000631023 IGFBP6P24592 240 aaPredicted RBP22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms