RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 TNIP3Q96KP6 325 aa5.84□□□□□ -1.48
LINC00560-201ENST00000564593 GNRHR2Q96P88 292 aa5.84□□□□□ -1.48
LINC00560-201ENST00000564593 C1orf43Q9BWL3 253 aa5.84□□□□□ -1.48
LINC00560-201ENST00000564593 SIDT1Q9NXL6 827 aaKnown RBP5.84□□□□□ -1.48
LINC00560-201ENST00000564593 RTEL1Q9NZ71 1219 aa5.84□□□□□ -1.48
LINC00560-201ENST00000564593 PHTF1Q9UMS5 762 aa5.84□□□□□ -1.48
LINC00560-201ENST00000564593 ZNF536O15090 1300 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 TBKBP1A7MCY6 615 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 FOXD2O60548 495 aaPredicted RBP5.83□□□□□ -1.48
LINC00560-201ENST00000564593 SBK3P0C264 359 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 CNR2P34972 360 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 AK2P54819 239 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 CLRN1P58418 232 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 RAP2BP61225 183 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 MFSD5Q6N075 450 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 UBE3BQ7Z3V4 1068 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 IL17RDQ8NFM7 739 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 IL31RAQ8NI17 732 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 OR14A2Q96R54 314 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 STRBPQ96SI9 672 aaKnown RBP5.83□□□□□ -1.48
LINC00560-201ENST00000564593 ELAC2Q9BQ52 826 aaKnown RBP5.83□□□□□ -1.48
LINC00560-201ENST00000564593 LRRC27Q9C0I9 530 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 MEGF9Q9H1U4 602 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 SLAMF7Q9NQ25 335 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 PLA2G3Q9NZ20 509 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 COMMD10Q9Y6G5 202 aa5.83□□□□□ -1.48
LINC00560-201ENST00000564593 TPD52L2O43399 206 aaKnown RBP5.82□□□□□ -1.48
LINC00560-201ENST00000564593 FRS3O43559 492 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 AHSGP02765 367 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 GNAT2P19087 354 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 SLC7A1P30825 629 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 PIK3CGP48736 1102 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 DUSP8Q13202 625 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 LONRF1Q17RB8 773 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 BMT2Q1RMZ1 405 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 FRMD5Q7Z6J6 570 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 FAM83AQ86UY5 434 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 KRT78Q8N1N4 520 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 CELF5Q8N6W0 485 aaKnown RBP5.82□□□□□ -1.48
LINC00560-201ENST00000564593 ANKS1AQ92625 1134 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 APIPQ96GX9 242 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 CPPED1Q9BRF8 314 aaPredicted RBP5.82□□□□□ -1.48
LINC00560-201ENST00000564593 NDC1Q9BTX1 674 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 PACSIN1Q9BY11 444 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 KLHL11Q9NVR0 708 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 PIH1D1Q9NWS0 290 aaKnown RBP5.82□□□□□ -1.48
LINC00560-201ENST00000564593 PNPLA7Q6ZV29 1317 aa5.82□□□□□ -1.48
LINC00560-201ENST00000564593 NPEPPSL1A6NEC2 478 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 PRR5-ARHGAP8B1AHC4 643 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 POMCP01189 267 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 GNAI3P08754 354 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 PHKA1P46020 1223 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 GNAI1P63096 354 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 IFIT5Q13325 482 aaKnown RBP5.81□□□□□ -1.48
LINC00560-201ENST00000564593 CCDC93Q567U6 631 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 DOK3Q7L591 496 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 APBB1IPQ7Z5R6 666 aaPredicted RBP5.81□□□□□ -1.48
LINC00560-201ENST00000564593 NLGN4YQ8NFZ3 816 aaPredicted RBP5.81□□□□□ -1.48
LINC00560-201ENST00000564593 TBCBQ99426 244 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 MYD88Q99836 296 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 LSM14BQ9BX40 385 aaKnown RBP5.81□□□□□ -1.48
LINC00560-201ENST00000564593 RSAD1Q9HA92 442 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 KIAA1586Q9HCI6 787 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 PPP4R1LQ9P1A2 415 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 USP19O94966 1318 aa5.81□□□□□ -1.48
LINC00560-201ENST00000564593 RHPN2P1A8MT19 583 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 AMHP03971 560 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 ALAS1P13196 640 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 NPR1P16066 1061 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 HDCP19113 662 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 SOX8P57073 446 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 EXOSC9Q06265 439 aaKnown RBP5.8□□□□□ -1.48
LINC00560-201ENST00000564593 SRLQ86TD4 932 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 MORC1Q86VD1 984 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 ZFP28Q8NHY6 868 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 TFAP2CQ92754 450 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 PHKBQ93100 1093 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 MRGPRX1Q96LB2 322 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 KCNC2Q96PR1 638 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 ZCCHC4Q9H5U6 513 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 BRD9Q9H8M2 597 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 SPON1Q9HCB6 807 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.8□□□□□ -1.48
LINC00560-201ENST00000564593 ZDHHC8Q9ULC8 765 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 OGDHLQ9ULD0 1010 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 SNX13Q9Y5W8 968 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 OTOL1A6NHN0 477 aaPredicted RBP5.8□□□□□ -1.48
LINC00560-201ENST00000564593 ISM1B1AKI9 464 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 MYO1FO00160 1098 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 MFAP3LO75121 409 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 SLC43A1O75387 559 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 MATN4O95460 622 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 LDHAP00338 332 aaKnown RBP5.8□□□□□ -1.48
LINC00560-201ENST00000564593 BRAFP15056 766 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 MSX2P35548 267 aaPredicted RBP5.8□□□□□ -1.48
LINC00560-201ENST00000564593 PIK3CBP42338 1070 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 KCNJ5P48544 419 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 ALDH5A1P51649 535 aaPredicted RBP5.8□□□□□ -1.48
LINC00560-201ENST00000564593 NOMO3P69849 1222 aa5.8□□□□□ -1.48
LINC00560-201ENST00000564593 UBXN2BQ14CS0 331 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms