RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 AGBL1Q96MI9 1066 aa14.15□□□□□ -0.14
CLK3-206ENST00000562078 FGFBP2Q9BYJ0 223 aa14.15□□□□□ -0.14
CLK3-206ENST00000562078 ZNF341Q9BYN7 854 aa14.15□□□□□ -0.14
CLK3-206ENST00000562078 KCNK9Q9NPC2 374 aa14.15□□□□□ -0.14
CLK3-206ENST00000562078 COMMD3-BMI1R4GMX3 469 aa14.15□□□□□ -0.14
CLK3-206ENST00000562078 A6NJR5 290 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 SUPT3HO75486 399 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 KRT36O76013 467 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 ASLP04424 464 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 ZNF76P36508 570 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 MPP2Q14168 576 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 LIN52Q52LA3 116 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 RNF168Q8IYW5 571 aaPredicted RBP14.14□□□□□ -0.15
CLK3-206ENST00000562078 LRRC57Q8N9N7 239 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 SNRNP27Q8WVK2 155 aaKnown RBP14.14□□□□□ -0.15
CLK3-206ENST00000562078 CKAP2Q8WWK9 683 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 ABTB1Q969K4 478 aaPredicted RBP14.14□□□□□ -0.15
CLK3-206ENST00000562078 TUBGCP5Q96RT8 1024 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 FBXO28Q9NVF7 368 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 TUBGCP4Q9UGJ1 667 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 CHKBQ9Y259 395 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 PPP2R3BQ9Y5P8 575 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 PIK3CDO00329 1044 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 MEIS1O00470 390 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 TBX3O15119 743 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 MSH4O15457 936 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 NEK3P51956 506 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 LRRC63Q05C16 580 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 MAN2A1Q16706 1144 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 DUPD1Q68J44 220 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 ZDHHC24Q6UX98 284 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 LRRC74BQ6ZQY2 392 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 MYOCDQ8IZQ8 938 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 DTX3LQ8TDB6 740 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 DCPSQ96C86 337 aaKnown RBP14.14□□□□□ -0.15
CLK3-206ENST00000562078 DYDC2Q96IM9 177 aa14.14□□□□□ -0.15
CLK3-206ENST00000562078 BMP2KQ9NSY1 1161 aaPredicted RBP14.14□□□□□ -0.15
CLK3-206ENST00000562078 LOXHD1Q8IVV2 1947 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 FGGP02679 453 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 HNRNPCP07910 306 aaKnown RBP eCLIP14.13□□□□□ -0.15
CLK3-206ENST00000562078 ITGA2BP08514 1039 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 CYP11B2P19099 503 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 LONRF1Q17RB8 773 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 DSTYKQ6XUX3 929 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 LRRC55Q6ZSA7 311 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 CATSPER3Q86XQ3 398 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 CHURC1Q8WUH1 139 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 INPP5DQ92835 1189 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 ARHGEF2Q92974 986 aaKnown RBP14.13□□□□□ -0.15
CLK3-206ENST00000562078 NAP1L3Q99457 506 aaPredicted RBP14.13□□□□□ -0.15
CLK3-206ENST00000562078 TANGO6Q9C0B7 1094 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 RANBP17Q9H2T7 1088 aaKnown RBP14.13□□□□□ -0.15
CLK3-206ENST00000562078 FZD1Q9UP38 647 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 PITPNM2Q9BZ72 1349 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 CAPN9O14815 690 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 NOL4O94818 638 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 KRT18P05783 430 aaKnown RBP14.13□□□□□ -0.15
CLK3-206ENST00000562078 CIITAP33076 1130 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 POLR2FP61218 127 aaKnown RBP14.13□□□□□ -0.15
CLK3-206ENST00000562078 PSMC6P62333 389 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 UBXN2AP68543 259 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 DR1Q01658 176 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 CYP4A11Q02928 519 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 SETDB1Q15047 1291 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 MTFR1Q15390 333 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 WDR72Q3MJ13 1102 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 CCDC65Q8IXS2 484 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 ZBTB8BQ8NAP8 495 aaPredicted RBP14.13□□□□□ -0.15
CLK3-206ENST00000562078 ERMNQ8TAM6 284 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 LENG1Q96BZ8 264 aaPredicted RBP14.13□□□□□ -0.15
CLK3-206ENST00000562078 CLMNQ96JQ2 1002 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 FAM20AQ96MK3 541 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 WRNIP1Q96S55 665 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 ERP44Q9BS26 406 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 ZHX3Q9H4I2 956 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 VAV3Q9UKW4 847 aa14.13□□□□□ -0.15
CLK3-206ENST00000562078 PARP14Q460N5 1801 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 A0A0J9YVX5 310 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 TBX10O75333 385 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 ATP5HO75947 161 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 LMNAP02545 664 aaKnown RBP14.12□□□□□ -0.15
CLK3-206ENST00000562078 POLGP54098 1239 aaPredicted RBP14.12□□□□□ -0.15
CLK3-206ENST00000562078 SLC12A3P55017 1021 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 ADCY1Q08828 1119 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 RAPGEF1Q13905 1077 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 PRKG1Q13976 671 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 TTLL12Q14166 644 aaPredicted RBP14.12□□□□□ -0.15
CLK3-206ENST00000562078 C4orf50Q6ZRC1 276 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 SULF1Q8IWU6 871 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 RASGEF1CQ8N431 466 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 FAM133AQ8N9E0 248 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 DNAJC1Q96KC8 554 aaKnown RBP14.12□□□□□ -0.15
CLK3-206ENST00000562078 LRRC37BQ96QE4 947 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 TSG101Q99816 390 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 STMN4Q9H169 189 aaPredicted RBP14.12□□□□□ -0.15
CLK3-206ENST00000562078 IGLV3-22A0A075B6J6 115 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 SLC26A4O43511 780 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 CYP3A4P08684 503 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 SPATA31C1P0DKV0 1188 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 RPA1P27694 616 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms