RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 NT5DC4Q86YG4 428 aa11.61□□□□□ -0.55
LINC00239-201ENST00000556973 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.61□□□□□ -0.55
LINC00239-201ENST00000556973 HASPINQ8TF76 798 aa11.61□□□□□ -0.55
LINC00239-201ENST00000556973 C18orf25Q96B23 403 aaPredicted RBP11.61□□□□□ -0.55
LINC00239-201ENST00000556973 CBWD1Q9BRT8 395 aa11.61□□□□□ -0.55
LINC00239-201ENST00000556973 TTPALQ9BTX7 342 aa11.61□□□□□ -0.55
LINC00239-201ENST00000556973 PCIF1Q9H4Z3 704 aa11.61□□□□□ -0.55
LINC00239-201ENST00000556973 RXFP1Q9HBX9 757 aa11.61□□□□□ -0.55
LINC00239-201ENST00000556973 KIAA1586Q9HCI6 787 aa11.61□□□□□ -0.55
LINC00239-201ENST00000556973 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.61□□□□□ -0.55
LINC00239-201ENST00000556973 FNIP2Q9P278 1114 aa11.61□□□□□ -0.55
LINC00239-201ENST00000556973 CGNQ9P2M7 1197 aaKnown RBP11.61□□□□□ -0.55
LINC00239-201ENST00000556973 HOOK1Q9UJC3 728 aaKnown RBP11.61□□□□□ -0.55
LINC00239-201ENST00000556973 ZNF233A6NK53 670 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 H3BQ06 376 aaPredicted RBP11.6□□□□□ -0.55
LINC00239-201ENST00000556973 C2CD2LO14523 706 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 TGFB1I1O43294 461 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 KIF20AO95235 890 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 GLP2RO95838 553 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 C1RP00736 705 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 CNPP09543 421 aaKnown RBP11.6□□□□□ -0.55
LINC00239-201ENST00000556973 BMP1P13497 986 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 FGFR3P22607 806 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 LRPAP1P30533 357 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 DLX2Q07687 328 aaPredicted RBP11.6□□□□□ -0.55
LINC00239-201ENST00000556973 KCNB1Q14721 858 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 JADE1Q6IE81 842 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.6□□□□□ -0.55
LINC00239-201ENST00000556973 HS2ST1Q7LGA3 356 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 CEP57Q86XR8 500 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 NELFCDQ8IXH7 590 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 ELOA2Q8IYF1 753 aaPredicted RBP11.6□□□□□ -0.55
LINC00239-201ENST00000556973 GPD1LQ8N335 351 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 BEST2Q8NFU1 509 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 SLC22A17Q8WUG5 538 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 CASP10Q92851 521 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 SAAL1Q96ER3 474 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 MSLNLQ96KJ4 702 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 IPO9Q96P70 1041 aaKnown RBP11.6□□□□□ -0.55
LINC00239-201ENST00000556973 CLEC1BQ9P126 229 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 FAM50BQ9Y247 325 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 C2CD2Q9Y426 696 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 NUB1Q9Y5A7 615 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 HCFC2Q9Y5Z7 792 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 XIRP2A4UGR9 3374 aa11.6□□□□□ -0.55
LINC00239-201ENST00000556973 MTCL1Q9Y4B5 1905 aaKnown RBP11.59□□□□□ -0.55
LINC00239-201ENST00000556973 GOLGA8IPA6NC78 632 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 GOLGA8JA6NMD2 632 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 TBX10O75333 385 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 ADH1AP07327 375 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 HOXB8P17481 243 aaPredicted RBP11.59□□□□□ -0.55
LINC00239-201ENST00000556973 PAX3P23760 479 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 IGFBP6P24592 240 aaPredicted RBP11.59□□□□□ -0.55
LINC00239-201ENST00000556973 KCNQ1P51787 676 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 CLCN4P51793 760 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 TMEM132DQ14C87 1099 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 RTP2Q5QGT7 225 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 LLGL2Q6P1M3 1020 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 BRSK2Q8IWQ3 736 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 C12orf56Q8IXR9 622 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 KIAA0895Q8NCT3 520 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 C3orf58Q8NDZ4 430 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 VN1R2Q8NFZ6 395 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 GOLGA5Q8TBA6 731 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 LNX1Q8TBB1 728 aaPredicted RBP11.59□□□□□ -0.55
LINC00239-201ENST00000556973 CACTINQ8WUQ7 758 aaKnown RBP11.59□□□□□ -0.55
LINC00239-201ENST00000556973 TMEM174Q8WUU8 243 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 RIN2Q8WYP3 895 aaPredicted RBP11.59□□□□□ -0.55
LINC00239-201ENST00000556973 FBXL18Q96ME1 805 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 GSDMAQ96QA5 445 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 AGPAT3Q9NRZ7 376 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 RMND1Q9NWS8 449 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 RBAKQ9NYW8 714 aaPredicted RBP11.59□□□□□ -0.55
LINC00239-201ENST00000556973 HSPBP1Q9NZL4 362 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 TUBGCP4Q9UGJ1 667 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 DPP7Q9UHL4 492 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 CD207Q9UJ71 328 aa11.59□□□□□ -0.55
LINC00239-201ENST00000556973 VWA8A3KMH1 1905 aa11.58□□□□□ -0.55
LINC00239-201ENST00000556973 PLXNA3P51805 1871 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 GRXCR2A6NFK2 248 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 PIRO00625 290 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 PDXKO00764 312 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 CLIC2O15247 247 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 TEX28O15482 410 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 GADD45BO75293 160 aaPredicted RBP11.58□□□□□ -0.56
LINC00239-201ENST00000556973 SMC2O95347 1197 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 BRCC3P46736 316 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 UBE2HP62256 183 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 RBM10P98175 930 aaKnown RBP11.58□□□□□ -0.56
LINC00239-201ENST00000556973 PNOCQ13519 176 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 SURF1Q15526 300 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 PTCRAQ6ISU1 281 aaPredicted RBP11.58□□□□□ -0.56
LINC00239-201ENST00000556973 ANKRD54Q6NXT1 300 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 ANKS3Q6ZW76 656 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 XXYLT1Q8NBI6 393 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 ZSWIM2Q8NEG5 633 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 SPATA20Q8TB22 786 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 NOC3LQ8WTT2 800 aaKnown RBP11.58□□□□□ -0.56
LINC00239-201ENST00000556973 PIK3R5Q8WYR1 880 aa11.58□□□□□ -0.56
LINC00239-201ENST00000556973 B3GALT6Q96L58 329 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms