RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 MOSPD1Q9UJG1 213 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 HEMK1Q9Y5R4 338 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 KAT6BQ8WYB5 2073 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 ITM2AO43736 263 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 TSPAN1O60635 241 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 MAGEC1O60732 1142 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 CD48P09326 243 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 EEF2P13639 858 aaKnown RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 PGM1P36871 562 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 CETN2P41208 172 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 CDK9P50750 372 aaKnown RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 THOP1P52888 689 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 COL19A1Q14993 1142 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 NONOQ15233 471 aaKnown RBP eCLIP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 HERC4Q5GLZ8 1057 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 RWDD4Q6NW29 188 aaKnown RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 RRAGAQ7L523 313 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 MTDHQ86UE4 582 aaKnown RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 MMAAQ8IVH4 418 aaKnown RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 METTL13Q8N6R0 699 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 MORC4Q8TE76 937 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 PHKBQ93100 1093 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 BTBD9Q96Q07 612 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 NOC4LQ9BVI4 516 aaKnown RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 SPZ1Q9BXG8 430 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 GLT8D2Q9H1C3 349 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 FOXP1Q9H334 677 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 RIC8AQ9NPQ8 531 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 TYW1Q9NV66 732 aaKnown RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 MTRF1LQ9UGC7 380 aaKnown RBP14.59□□□□□ -0.07
SHMT2-226ENST00000556825 RABGAP1Q9Y3P9 1069 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 PALLDQ8WX93 1383 aa14.59□□□□□ -0.07
SHMT2-226ENST00000556825 FAM187AA6NFU0 413 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 GUCY1B2O75343 617 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 MMP1P03956 469 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 ABCB1P08183 1280 aaPredicted RBP14.58□□□□□ -0.07
SHMT2-226ENST00000556825 DDX5P17844 614 aaKnown RBP14.58□□□□□ -0.07
SHMT2-226ENST00000556825 METAP2P50579 478 aaKnown RBP eCLIP14.58□□□□□ -0.071e-6■■■□□ 16.1
SHMT2-226ENST00000556825 NR1H2P55055 460 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 IFIT5Q13325 482 aaKnown RBP14.58□□□□□ -0.07
SHMT2-226ENST00000556825 TMEM266Q2M3C6 531 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 TRMT5Q32P41 509 aaKnown RBP14.58□□□□□ -0.07
SHMT2-226ENST00000556825 ZNF829Q3KNS6 432 aaPredicted RBP14.58□□□□□ -0.07
SHMT2-226ENST00000556825 C6orf163Q5TEZ5 329 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 AGAP9Q5VTM2 703 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 USP43Q70EL4 1123 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 ELMOD1Q8N336 334 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 MARVELD2Q8N4S9 558 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.58□□□□□ -0.07
SHMT2-226ENST00000556825 PDZD8Q8NEN9 1154 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 C8orf48Q96LL4 319 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 ARL8BQ9NVJ2 186 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 TAS2R1Q9NYW7 299 aa14.58□□□□□ -0.07
SHMT2-226ENST00000556825 WDR19Q8NEZ3 1342 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 ALOX15BO15296 676 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 FKBP6O75344 327 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 USP1O94782 785 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 ESRRBO95718 433 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 ANTXR2P58335 489 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 HGSNATQ68CP4 663 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 LVRNQ6Q4G3 990 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 RGS9BPQ6ZS82 235 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 CYP2U1Q7Z449 544 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 DIS3L2Q8IYB7 885 aaKnown RBP14.58□□□□□ -0.08
SHMT2-226ENST00000556825 LSMEM1Q8N8F7 131 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 FBXO25Q8TCJ0 367 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 HCAR2Q8TDS4 363 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 FAM172AQ8WUF8 416 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 PLEKHA8Q96JA3 519 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 NEUROD6Q96NK8 337 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 RUNDC3BQ96NL0 473 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 CYTH2Q99418 400 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 NCKIPSDQ9NZQ3 722 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 VPS51Q9UID3 782 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 PPM1HQ9ULR3 514 aa14.58□□□□□ -0.08
SHMT2-226ENST00000556825 BTNL10A8MVZ5 291 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 ARHGAP33O14559 1287 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 EPHB6O15197 1021 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 EDF1O60869 148 aaKnown RBP14.57□□□□□ -0.08
SHMT2-226ENST00000556825 SPAG7O75391 227 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 CRYZL1O95825 349 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 LONP1P36776 959 aaKnown RBP14.57□□□□□ -0.08
SHMT2-226ENST00000556825 PRKCIP41743 596 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 AQP4P55087 323 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 ACTR3P61158 418 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 DR1Q01658 176 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 HSPA14Q0VDF9 509 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 ACAP1Q15027 740 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 PPP2R5EQ16537 467 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 LONRF1Q17RB8 773 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 TTI2Q6NXR4 508 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 FBXL19Q6PCT2 694 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 CLEC4GQ6UXB4 293 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 SLC38A6Q8IZM9 456 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 PCYOX1LQ8NBM8 494 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 KCNH5Q8NCM2 988 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 ZNF398Q8TD17 642 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 SCFD1Q8WVM8 642 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 TRIM55Q9BYV6 548 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 ZNF696Q9H7X3 374 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms