RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 CHD9Q3L8U1 2897 aa20.33■□□□□ 0.84
VPS33A-205ENST00000541169 ANK1P16157 1881 aa20.33■□□□□ 0.84
VPS33A-205ENST00000541169 NT5C1B-RDH14C9J2C7 533 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 PODXLO00592 558 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 IKBKBO14920 756 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 B4GALT3O60512 393 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 LETM1O95202 739 aaPredicted RBP20.32■□□□□ 0.84
VPS33A-205ENST00000541169 TNNC2P02585 160 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 SOD2P04179 222 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 IGFBP4P22692 258 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 PBX3P40426 434 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 CLCNKBP51801 687 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 PAK1Q13153 545 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 SMC1AQ14683 1233 aaKnown RBP20.32■□□□□ 0.84
VPS33A-205ENST00000541169 KLHL40Q2TBA0 621 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 SPRED2Q7Z698 418 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 TMC2Q8TDI7 906 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 ANKRD36BP1Q96IX9 119 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 CEP63Q96MT8 703 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 DPP3Q9NY33 737 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 MTCH2Q9Y6C9 303 aa20.32■□□□□ 0.84
VPS33A-205ENST00000541169 PLXNA4Q9HCM2 1894 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 PPP1R3GB7ZBB8 358 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 SLC16A3O15427 465 aaKnown RBP20.31■□□□□ 0.84
VPS33A-205ENST00000541169 EFEMP2O95967 443 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 NFICP08651 508 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 TMEM191BP0C7N4 346 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 KRT13P13646 458 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 BMP6P22004 513 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 CLDN10P78369 228 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 SOX4Q06945 474 aaPredicted RBP20.31■□□□□ 0.84
VPS33A-205ENST00000541169 USP41Q3LFD5 358 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 CEP135Q66GS9 1140 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 ISM2Q6H9L7 571 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 FUT10Q6P4F1 479 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 TMC7Q7Z402 723 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 VPS52Q8N1B4 723 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 RDH13Q8NBN7 331 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 MICAL1Q8TDZ2 1067 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 MYLIPQ8WY64 445 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 C18orf25Q96B23 403 aaPredicted RBP20.31■□□□□ 0.84
VPS33A-205ENST00000541169 CDCA3Q99618 268 aaPredicted RBP20.31■□□□□ 0.84
VPS33A-205ENST00000541169 CXCL16Q9H2A7 254 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 NSUN3Q9H649 340 aaKnown RBP20.31■□□□□ 0.84
VPS33A-205ENST00000541169 PDE11AQ9HCR9 933 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 MARCH5Q9NX47 278 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 NUB1Q9Y5A7 615 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 MYO9BQ13459 2157 aa20.31■□□□□ 0.84
VPS33A-205ENST00000541169 FSCN2O14926 492 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 STX10O60499 249 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 KIF4AO95239 1232 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 GNA14O95837 355 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 CTSAP10619 480 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 EPB41P11171 864 aaKnown RBP20.3■□□□□ 0.84
VPS33A-205ENST00000541169 ERCC5P28715 1186 aaPredicted RBP20.3■□□□□ 0.84
VPS33A-205ENST00000541169 NLRP12P59046 1061 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 MCCD1P59942 119 aaPredicted RBP20.3■□□□□ 0.84
VPS33A-205ENST00000541169 TFAMQ00059 246 aaKnown RBP20.3■□□□□ 0.84
VPS33A-205ENST00000541169 ANKRD40Q6AI12 368 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 KIAA1841Q6NSI8 718 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 SASS6Q6UVJ0 657 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 ZC3H3Q8IXZ2 948 aaKnown RBP20.3■□□□□ 0.84
VPS33A-205ENST00000541169 RNF168Q8IYW5 571 aaPredicted RBP20.3■□□□□ 0.84
VPS33A-205ENST00000541169 NELFBQ8WX92 580 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 ZNF560Q96MR9 790 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 CGRRF1Q99675 332 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 TCF25Q9BQ70 676 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 HERC2P3Q9BVR0 1158 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 METTL14Q9HCE5 456 aaKnown RBP20.3■□□□□ 0.84
VPS33A-205ENST00000541169 ENTPD7Q9NQZ7 604 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.3■□□□□ 0.84
VPS33A-205ENST00000541169 MRPL17Q9NRX2 175 aaKnown RBP20.3■□□□□ 0.84
VPS33A-205ENST00000541169 INTS13Q9NVM9 706 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 RWDD2AQ9UIY3 292 aa20.3■□□□□ 0.84
VPS33A-205ENST00000541169 ANO9A1A5B4 782 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 RFXAPO00287 272 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 C1RP00736 705 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 URODP06132 367 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 TNNI1P19237 187 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 GLUD2P49448 558 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 RBP5P82980 135 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 ADGRE1Q14246 886 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 C9orf57Q5W0N0 161 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.29■□□□□ 0.84
VPS33A-205ENST00000541169 TMEM173Q86WV6 379 aaPredicted RBP20.29■□□□□ 0.84
VPS33A-205ENST00000541169 FAM186BQ8IYM0 893 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 LRRC52Q8N7C0 313 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 MRPL43Q8N983 215 aaKnown RBP20.29■□□□□ 0.84
VPS33A-205ENST00000541169 ZSWIM2Q8NEG5 633 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 PARD3BQ8TEW8 1205 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 OXCT2Q9BYC2 517 aaPredicted RBP20.29■□□□□ 0.84
VPS33A-205ENST00000541169 ZBP1Q9H171 429 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 CHST7Q9NS84 486 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 TUBGCP4Q9UGJ1 667 aa20.29■□□□□ 0.84
VPS33A-205ENST00000541169 PIRO00625 290 aa20.28■□□□□ 0.84
VPS33A-205ENST00000541169 SYN3O14994 580 aa20.28■□□□□ 0.84
VPS33A-205ENST00000541169 DLATP10515 647 aaKnown RBP20.28■□□□□ 0.84
VPS33A-205ENST00000541169 CD44P16070 742 aaKnown RBP20.28■□□□□ 0.84
VPS33A-205ENST00000541169 SPAG1Q07617 926 aa20.28■□□□□ 0.84
VPS33A-205ENST00000541169 CAMK1Q14012 370 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms