RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PAAF1Q9BRP4 392 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 CBWD1Q9BRT8 395 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 SLC39A2Q9NP94 309 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 AGPAT3Q9NRZ7 376 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 CLDND1Q9NY35 253 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 TTC28Q96AY4 2481 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 VCANP13611 3396 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 C5orf42Q9H799 3197 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.87□□□□□ -0.35
VPS52-213ENST00000461743 HIDE1A8MVS5 230 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 LACTBL1A8MY62 500 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 SYN3O14994 580 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 LILRB3O75022 631 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 B3GAT3O94766 335 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 CSPG5O95196 566 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 SMC2O95347 1197 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 ADH1AP07327 375 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 ACOT2P49753 483 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 STK4Q13043 487 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 ADAM15Q13444 863 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 KCNC3Q14003 757 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 SPATA1Q5VX52 437 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 KIAA1841Q6NSI8 718 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 ELMSAN1Q6PJG2 1045 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 CRELD2Q6UXH1 353 aaPredicted RBP12.87□□□□□ -0.35
VPS52-213ENST00000461743 PIK3R5Q8WYR1 880 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 CASP10Q92851 521 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 FBXL18Q96ME1 805 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 GSDMAQ96QA5 445 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 FAM213AQ9BRX8 229 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 TTPALQ9BTX7 342 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 GOLGA2P5Q9HBQ8 144 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 RXFP1Q9HBX9 757 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 DZANK1Q9NVP4 752 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 RBAKQ9NYW8 714 aaPredicted RBP12.87□□□□□ -0.35
VPS52-213ENST00000461743 HSPBP1Q9NZL4 362 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 FNIP2Q9P278 1114 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 FAM50BQ9Y247 325 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 PCDHGC5Q9Y5F6 944 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 BDP1A6H8Y1 2624 aa12.87□□□□□ -0.35
VPS52-213ENST00000461743 ARHGEF37A1IGU5 675 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 F8W810 466 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 PDXKO00764 312 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 TGFB1I1O43294 461 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 TBX10O75333 385 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 CXCL14O95715 111 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 GLP2RO95838 553 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 HOXB8P17481 243 aaPredicted RBP12.86□□□□□ -0.35
VPS52-213ENST00000461743 NDUFV1P49821 464 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 MYBPC2Q14324 1141 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 NFIL3Q16649 462 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 COBLL1Q53SF7 1204 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 TJAP1Q5JTD0 557 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 KIAA0319Q5VV43 1072 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 JADE1Q6IE81 842 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 SLC9A9Q8IVB4 645 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 GUF1Q8N442 669 aaKnown RBP12.86□□□□□ -0.35
VPS52-213ENST00000461743 XXYLT1Q8NBI6 393 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 SPATA20Q8TB22 786 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 C18orf25Q96B23 403 aaPredicted RBP12.86□□□□□ -0.35
VPS52-213ENST00000461743 SAAL1Q96ER3 474 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 GPR62Q9BZJ7 368 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 IKZF4Q9H2S9 585 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 TUBGCP4Q9UGJ1 667 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 DPP7Q9UHL4 492 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 NUB1Q9Y5A7 615 aa12.86□□□□□ -0.35
VPS52-213ENST00000461743 ZNF233A6NK53 670 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 CLASP2O75122 1294 aaKnown RBP12.85□□□□□ -0.35
VPS52-213ENST00000461743 NFICP08651 508 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 KCNA5P22460 613 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 FGFR3P22607 806 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 CA8P35219 290 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 LTBRP36941 435 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 AARSP49588 968 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS52-213ENST00000461743 SMAD4Q13485 552 aaKnown RBP12.85□□□□□ -0.35
VPS52-213ENST00000461743 PNOCQ13519 176 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 TPRNQ4KMQ1 711 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 FAM171A1Q5VUB5 890 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 RBM23Q86U06 439 aaKnown RBP12.85□□□□□ -0.35
VPS52-213ENST00000461743 NELFCDQ8IXH7 590 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 C3orf58Q8NDZ4 430 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 HASPINQ8TF76 798 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 HDAC7Q8WUI4 952 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 CACTINQ8WUQ7 758 aaKnown RBP12.85□□□□□ -0.35
VPS52-213ENST00000461743 FAM212AQ96EL1 285 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 MSLNLQ96KJ4 702 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 SUSD3Q96L08 255 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 ZNF560Q96MR9 790 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 GBP4Q96PP9 640 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 ASB2Q96Q27 587 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 OXCT2Q9BYC2 517 aaPredicted RBP12.85□□□□□ -0.35
VPS52-213ENST00000461743 KCTD10Q9H3F6 313 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 PRDM6Q9NQX0 595 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 CACNG4Q9UBN1 327 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 CD207Q9UJ71 328 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 HCFC2Q9Y5Z7 792 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 PTPRDP23468 1912 aa12.85□□□□□ -0.35
VPS52-213ENST00000461743 MAPK13O15264 365 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 CALUO43852 315 aaPredicted RBP12.84□□□□□ -0.35
VPS52-213ENST00000461743 PRPF40AO75400 957 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms