RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 GLRA4Q5JXX5 417 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 ALKAL1Q6UXT8 129 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.89□□□□□ -0.67
CD44-207ENST00000425428 SV2AQ7L0J3 742 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 TRAPPC11Q7Z392 1133 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 PPFIBP1Q86W92 1011 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 ZNF397Q8NF99 534 aaPredicted RBP10.89□□□□□ -0.67
CD44-207ENST00000425428 TAF4BQ92750 862 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 POP1Q99575 1024 aaKnown RBP10.89□□□□□ -0.67
CD44-207ENST00000425428 MTMR12Q9C0I1 747 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 RTN4Q9NQC3 1192 aaKnown RBP10.89□□□□□ -0.67
CD44-207ENST00000425428 RAB20Q9NX57 234 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 GCNT4Q9P109 453 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 DAAM1Q9Y4D1 1078 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 NUB1Q9Y5A7 615 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 A0A1B0GTH6 734 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 PMM2O15305 246 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 TRAPPC3O43617 180 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 TLL1O43897 1013 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 ZC3H11AO75152 810 aaKnown RBP eCLIP10.88□□□□□ -0.67
CD44-207ENST00000425428 ITGB3P05106 788 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 FGFR1P11362 822 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 YWHAEP62258 255 aaKnown RBP10.88□□□□□ -0.67
CD44-207ENST00000425428 TNNC1P63316 161 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 DLG4P78352 724 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 MLLT1Q03111 559 aaPredicted RBP10.88□□□□□ -0.67
CD44-207ENST00000425428 NCOA4Q13772 614 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 TRIM14Q14142 442 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 ZACNQ401N2 412 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 SV2CQ496J9 727 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 XKR4Q5GH76 650 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 LMBRD2Q68DH5 695 aaPredicted RBP10.88□□□□□ -0.67
CD44-207ENST00000425428 FAM117BQ6P1L5 589 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 LINC01599Q8WXQ3 324 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 ZFP42Q96MM3 310 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 NT5C1BQ96P26 610 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 COLEC11Q9BWP8 271 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 XPO4Q9C0E2 1151 aaKnown RBP10.88□□□□□ -0.67
CD44-207ENST00000425428 AGAP1Q9UPQ3 857 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 FNDC1Q4ZHG4 1894 aaPredicted RBP10.88□□□□□ -0.67
CD44-207ENST00000425428 A0A1W2PQC6 194 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 DGKIO75912 1065 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 RFX1P22670 979 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 OR1G1P47890 313 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 BMS1Q14692 1282 aaKnown RBP10.88□□□□□ -0.67
CD44-207ENST00000425428 ZNF699Q32M78 642 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 PAN2Q504Q3 1202 aaKnown RBP10.88□□□□□ -0.67
CD44-207ENST00000425428 ZNF667Q5HYK9 610 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 CACNA2D4Q7Z3S7 1137 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 CMTR2Q8IYT2 770 aaKnown RBP10.88□□□□□ -0.67
CD44-207ENST00000425428 FIBCD1Q8N539 461 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 RAD9AQ99638 391 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 TMEM175Q9BSA9 504 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 STK39Q9UEW8 545 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 FAN1Q9Y2M0 1017 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 RWDD3Q9Y3V2 267 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 PCDHB12Q9Y5F1 795 aa10.88□□□□□ -0.67
CD44-207ENST00000425428 INPPL1O15357 1258 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 NRDCO43847 1150 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 HLA-DRAP01903 254 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 C4BPAP04003 597 aaKnown RBP10.87□□□□□ -0.67
CD44-207ENST00000425428 TBXAS1P24557 533 aaPredicted RBP10.87□□□□□ -0.67
CD44-207ENST00000425428 POLR2BP30876 1174 aaKnown RBP10.87□□□□□ -0.67
CD44-207ENST00000425428 RGS19P49795 217 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 TAF6P49848 677 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 MFAP3P55082 362 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 PPP3CAQ08209 521 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 NR1I3Q14994 352 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 CLLU1OSQ5K130 101 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 TDRD10Q5VZ19 366 aaKnown RBP10.87□□□□□ -0.67
CD44-207ENST00000425428 DCLRE1AQ6PJP8 1040 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 ENOSF1Q7L5Y1 443 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.87□□□□□ -0.67
CD44-207ENST00000425428 EFCAB13Q8IY85 973 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 TTC39CQ8N584 583 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 LRRC52Q8N7C0 313 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 EHBP1Q8NDI1 1231 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 MRFAP1L1Q96HT8 127 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 HPDLQ96IR7 371 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 PPP1R10Q96QC0 940 aaKnown RBP10.87□□□□□ -0.67
CD44-207ENST00000425428 HSD3B7Q9H2F3 369 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 TBC1D13Q9NVG8 400 aa10.87□□□□□ -0.67
CD44-207ENST00000425428 FSD2A1L4K1 749 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 PODXLO00592 558 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 HUS1O60921 280 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 TADA2AO75478 443 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 GJB5O95377 273 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 ADCY5O95622 1261 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 CCDC172P0C7W6 258 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 LAG3P18627 525 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 LRPAP1P30533 357 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 MCCD1P59942 119 aaPredicted RBP10.86□□□□□ -0.67
CD44-207ENST00000425428 DEFB103AP81534 67 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 ELAVL2Q12926 359 aaKnown RBP10.86□□□□□ -0.67
CD44-207ENST00000425428 SYCP1Q15431 976 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 MIIPQ5JXC2 388 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 SPECC1LQ69YQ0 1117 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 DSTYKQ6XUX3 929 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 C16orf59Q7L2K0 433 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 METTL23Q86XA0 190 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms