RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 CCDC112Q8NEF3 446 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 UBE2TQ9NPD8 197 aaPredicted RBP10.81□□□□□ -0.68
HMGB3-201ENST00000325307 FAM105AQ9NUU6 356 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 RNF19AQ9NV58 838 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 DNAJC12Q9UKB3 198 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 LRRC53A6NM62 1247 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 C4BPAP04003 597 aaKnown RBP10.81□□□□□ -0.68
HMGB3-201ENST00000325307 NCOA4Q13772 614 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 GLRA4Q5JXX5 417 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 ANKRD33Q7Z3H0 272 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 NECAB2Q7Z6G3 386 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 NT5C1BQ96P26 610 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 RNF39Q9H2S5 420 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 SIX2Q9NPC8 291 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 C1orf112Q9NSG2 853 aa10.81□□□□□ -0.68
HMGB3-201ENST00000325307 PMM2O15305 246 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 CCL23P55773 120 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 MBTPS1Q14703 1052 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 IQCEQ6IPM2 695 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 CD302Q8IX05 232 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 EDEM3Q9BZQ6 932 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 SQORQ9Y6N5 450 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 COL6A1P12109 1028 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 ITGA4P13612 1032 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 POU5F1Q01860 360 aaKnown RBP10.8□□□□□ -0.68
HMGB3-201ENST00000325307 GABPB1Q06547 395 aaPredicted RBP10.8□□□□□ -0.68
HMGB3-201ENST00000325307 PHLDB3Q6NSJ2 640 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 SMG8Q8ND04 991 aaKnown RBP10.8□□□□□ -0.68
HMGB3-201ENST00000325307 LMO3Q8TAP4 145 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 SNX27Q96L92 541 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 TMEM39AQ9NV64 488 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 COQ4Q9Y3A0 265 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 UMODL1Q5DID0 1318 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 PITPNM1O00562 1244 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 MGEA5O60502 916 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 USP8P40818 1118 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 MCCD1P59942 119 aaPredicted RBP10.8□□□□□ -0.68
HMGB3-201ENST00000325307 FAAP100Q0VG06 881 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 SFMBT2Q5VUG0 894 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 PDXDC1Q6P996 788 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 TRAF7Q6Q0C0 670 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 C15orf39Q6ZRI6 1047 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 ARHGEF19Q8IW93 802 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 REXO1L1PQ8IX06 675 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 BAP1Q92560 729 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 SCLYQ96I15 445 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 DNAJC7Q99615 494 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 PLEKHA5Q9HAU0 1116 aa10.8□□□□□ -0.68
HMGB3-201ENST00000325307 PRDM5Q9NQX1 630 aaPredicted RBP10.8□□□□□ -0.68
HMGB3-201ENST00000325307 MEFVO15553 781 aaPredicted RBP10.79□□□□□ -0.68
HMGB3-201ENST00000325307 VNN1O95497 513 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 GUCY2FP51841 1108 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 CBX1P83916 185 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 TDRD12Q587J7 1177 aaKnown RBP10.79□□□□□ -0.68
HMGB3-201ENST00000325307 LPPQ93052 612 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 TOX2Q96NM4 488 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 NUCKS1Q9H1E3 243 aaKnown RBP10.79□□□□□ -0.68
HMGB3-201ENST00000325307 ITGB3P05106 788 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 CYP2C18P33260 490 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 RAB27AP51159 221 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 MYL6P60660 151 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 DRAP1Q14919 205 aaPredicted RBP10.79□□□□□ -0.68
HMGB3-201ENST00000325307 LRRC26Q2I0M4 334 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 SPOPLQ6IQ16 392 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 RPS6KC1Q96S38 1066 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 FAM53CQ9NYF3 392 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 AJAP1Q9UKB5 411 aaPredicted RBP10.79□□□□□ -0.68
HMGB3-201ENST00000325307 C2CD2Q9Y426 696 aa10.79□□□□□ -0.68
HMGB3-201ENST00000325307 PNMA6AP0CW24 399 aaPredicted RBP10.78□□□□□ -0.68
HMGB3-201ENST00000325307 MFAP3P55082 362 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 PTPN14Q15678 1187 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 ASIC2Q16515 512 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 CYP26C1Q6V0L0 522 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 TOGARAM2Q6ZUX3 1019 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 TATDN2Q93075 761 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 NAA15Q9BXJ9 866 aaKnown RBP10.78□□□□□ -0.68
HMGB3-201ENST00000325307 CXCL16Q9H2A7 254 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 DPP3Q9NY33 737 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 SOWAHDA6NJG2 315 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 NBNO60934 754 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 CST3P01034 146 aaPredicted RBP10.78□□□□□ -0.68
HMGB3-201ENST00000325307 RFX1P22670 979 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 NOP14P78316 857 aaKnown RBP10.78□□□□□ -0.68
HMGB3-201ENST00000325307 MTF1Q14872 753 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 ZNF699Q32M78 642 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 DEFB128Q7Z7B8 93 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 TMEM130Q8N3G9 435 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 BEST2Q8NFU1 509 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 KAT5Q92993 513 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 ZFP42Q96MM3 310 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 STK33Q9BYT3 514 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 DEF6Q9H4E7 631 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 MEIS3P2A8K0S8 358 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 GFPT2O94808 682 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 CLTBP09497 229 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 EN2P19622 333 aaPredicted RBP10.78□□□□□ -0.68
HMGB3-201ENST00000325307 STAT1P42224 750 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 DPY19L2P1Q6NXN4 242 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 TMTC1Q8IUR5 882 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 C1orf127Q8N9H9 656 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms