RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 LIFRP42702 1097 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 LAMTOR4Q0VGL1 99 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 NOTUMQ6P988 496 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 MICU3Q86XE3 530 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 ZNF713Q8N859 430 aaPredicted RBP18.53■□□□□ 0.56
CLK3-217ENST00000566126 CSGALNACT1Q8TDX6 532 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 CCDC51Q96ER9 411 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 RIT2Q99578 217 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 CORO1BQ9BR76 489 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 C8orf33Q9H7E9 229 aaPredicted RBP18.53■□□□□ 0.56
CLK3-217ENST00000566126 CACNA2D2Q9NY47 1150 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 MTRRQ9UBK8 725 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 SLC12A7Q9Y666 1083 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 CDY1Q9Y6F8 540 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 V9GY48 417 aaPredicted RBP18.53■□□□□ 0.56
CLK3-217ENST00000566126 ATG2BQ96BY7 2078 aa18.53■□□□□ 0.56
CLK3-217ENST00000566126 KIF26AQ9ULI4 1882 aaPredicted RBP18.52■□□□□ 0.56
CLK3-217ENST00000566126 BCLAF3A2AJT9 711 aaKnown RBP18.52■□□□□ 0.56
CLK3-217ENST00000566126 MYBPHLA2RUH7 354 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 CASTOR2A6NHX0 329 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 SPECC1L-ADORA2AF8WAN1 911 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 MOSPD3O75425 235 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 ERLIN2O94905 339 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 CAVIN2O95810 425 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 AXLP30530 894 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 CREB5Q02930 508 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 TUSC3Q13454 348 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 PDXDC1Q6P996 788 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 EXOC6Q8TAG9 804 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 SLC5A5Q92911 643 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 TMEM143Q96AN5 459 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 RSPRY1Q96DX4 576 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 TMEM87BQ96K49 555 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 JPH2Q9BR39 696 aaPredicted RBP18.52■□□□□ 0.56
CLK3-217ENST00000566126 TRPV4Q9HBA0 871 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 TMEM9BQ9NQ34 198 aa18.52■□□□□ 0.56
CLK3-217ENST00000566126 HEPACAM2A8MVW5 462 aa18.51■□□□□ 0.55
CLK3-217ENST00000566126 CTHP32929 405 aa18.51■□□□□ 0.55
CLK3-217ENST00000566126 KPNA1P52294 538 aaPredicted RBP18.51■□□□□ 0.55
CLK3-217ENST00000566126 FGD1P98174 961 aa18.51■□□□□ 0.55
CLK3-217ENST00000566126 SPIRE1Q08AE8 756 aa18.51■□□□□ 0.55
CLK3-217ENST00000566126 HDAC1Q13547 482 aaPredicted RBP18.51■□□□□ 0.55
CLK3-217ENST00000566126 PON2Q15165 354 aa18.51■□□□□ 0.55
CLK3-217ENST00000566126 MIER3Q7Z3K6 550 aa18.51■□□□□ 0.55
CLK3-217ENST00000566126 SYNPOQ8N3V7 929 aa18.51■□□□□ 0.55
CLK3-217ENST00000566126 ZNF579Q8NAF0 562 aaKnown RBP18.51■□□□□ 0.55
CLK3-217ENST00000566126 RDM1Q8NG50 284 aa18.51■□□□□ 0.55
CLK3-217ENST00000566126 PSPC1Q8WXF1 523 aaKnown RBP18.51■□□□□ 0.55
CLK3-217ENST00000566126 TEKT3Q9BXF9 490 aa18.51■□□□□ 0.55
CLK3-217ENST00000566126 KALRNO60229 2985 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 FAM221BA6H8Z2 402 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 ZNF197O14709 1029 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 LRG1P02750 347 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 FGFR3P22607 806 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 NPEPPSP55786 919 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 LRCH2Q5VUJ6 765 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 B3GNT9Q6UX72 402 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.5■□□□□ 0.55
CLK3-217ENST00000566126 RNF149Q8NC42 400 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 ZSCAN18Q8TBC5 510 aaPredicted RBP18.5■□□□□ 0.55
CLK3-217ENST00000566126 ZMYM2Q9UBW7 1377 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 ABCA7Q8IZY2 2146 aa18.5■□□□□ 0.55
CLK3-217ENST00000566126 CHADO15335 359 aa18.49■□□□□ 0.55
CLK3-217ENST00000566126 PSMD10O75832 226 aa18.49■□□□□ 0.55
CLK3-217ENST00000566126 IGFBP6P24592 240 aaPredicted RBP18.49■□□□□ 0.55
CLK3-217ENST00000566126 MCM5P33992 734 aa18.49■□□□□ 0.55
CLK3-217ENST00000566126 ELAVL2Q12926 359 aaKnown RBP18.49■□□□□ 0.55
CLK3-217ENST00000566126 AMHR2Q16671 573 aa18.49■□□□□ 0.55
CLK3-217ENST00000566126 PDZD4Q76G19 769 aaPredicted RBP18.49■□□□□ 0.55
CLK3-217ENST00000566126 RALGPS2Q86X27 583 aaPredicted RBP18.49■□□□□ 0.55
CLK3-217ENST00000566126 TTC8Q8TAM2 541 aa18.49■□□□□ 0.55
CLK3-217ENST00000566126 LRRC2Q9BYS8 371 aa18.49■□□□□ 0.55
CLK3-217ENST00000566126 TRIM6Q9C030 488 aaPredicted RBP18.49■□□□□ 0.55
CLK3-217ENST00000566126 DHX33Q9H6R0 707 aaKnown RBP18.49■□□□□ 0.55
CLK3-217ENST00000566126 DCLK1O15075 740 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 GJA1P17302 382 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 ARF4P18085 180 aaPredicted RBP18.48■□□□□ 0.55
CLK3-217ENST00000566126 FCHO2Q0JRZ9 810 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 FERMT3Q86UX7 667 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 CDR2LQ86X02 465 aaPredicted RBP18.48■□□□□ 0.55
CLK3-217ENST00000566126 HACE1Q8IYU2 909 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 HS6ST3Q8IZP7 471 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 REXO1Q8N1G1 1221 aaKnown RBP18.48■□□□□ 0.55
CLK3-217ENST00000566126 GLIS3Q8NEA6 775 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 SLC7A3Q8WY07 619 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 BMP2KQ9NSY1 1161 aaPredicted RBP18.48■□□□□ 0.55
CLK3-217ENST00000566126 SNTG2Q9NY99 539 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 PARP2Q9UGN5 583 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 BACE2Q9Y5Z0 518 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 ACACAQ13085 2346 aa18.48■□□□□ 0.55
CLK3-217ENST00000566126 ASXL3Q9C0F0 2248 aa18.47■□□□□ 0.55
CLK3-217ENST00000566126 SPAARA0A1B0GVQ0 90 aa18.47■□□□□ 0.55
CLK3-217ENST00000566126 EIF4E1BA6NMX2 242 aaKnown RBP18.47■□□□□ 0.55
CLK3-217ENST00000566126 PCBP1Q15365 356 aaKnown RBP eCLIP18.47■□□□□ 0.55
CLK3-217ENST00000566126 ELF2Q15723 593 aa18.47■□□□□ 0.55
CLK3-217ENST00000566126 NAB2Q15742 525 aa18.47■□□□□ 0.55
CLK3-217ENST00000566126 UAP1L1Q3KQV9 507 aa18.47■□□□□ 0.55
CLK3-217ENST00000566126 B4GALNT3Q6L9W6 998 aa18.47■□□□□ 0.55
CLK3-217ENST00000566126 CCDC136Q96JN2 1154 aa18.47■□□□□ 0.55
CLK3-217ENST00000566126 ZMYND12Q9H0C1 365 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms