RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ZNF747Q9BV97 191 aa6□□□□□ -1.45
SCFD1-221ENST00000556534 C11orf54Q9H0W9 315 aaPredicted RBP6□□□□□ -1.45
SCFD1-221ENST00000556534 PARPBPQ9NWS1 579 aa6□□□□□ -1.45
SCFD1-221ENST00000556534 SORCS3Q9UPU3 1222 aa6□□□□□ -1.45
SCFD1-221ENST00000556534 EID1Q9Y6B2 187 aa6□□□□□ -1.45
SCFD1-221ENST00000556534 AHRRA9YTQ3 701 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 PPM1GO15355 546 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-221ENST00000556534 FAM20BO75063 409 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 RFPL1O75677 317 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 SCGB1D2O95969 90 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 CT47B1P0C2W7 299 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-221ENST00000556534 ZNF280AP59817 542 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-221ENST00000556534 LRRC41Q15345 812 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 NFE2Q16621 373 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-221ENST00000556534 FAM102AQ5T9C2 384 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-221ENST00000556534 UBE3BQ7Z3V4 1068 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 TTC7BQ86TV6 843 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 PLEKHG4BQ96PX9 1271 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 VPS11Q9H270 941 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 CALCOCO1Q9P1Z2 691 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 POGKQ9P215 609 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 KLHL42Q9P2K6 505 aa5.99□□□□□ -1.45
SCFD1-221ENST00000556534 EIF2B4Q9UI10 523 aaKnown RBP5.99□□□□□ -1.45
SCFD1-221ENST00000556534 LRRC14BA6NHZ5 514 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 DRGXA6NNA5 263 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 AMHP03971 560 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 CD1AP06126 327 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 NR4A1P22736 598 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 SLC6A2P23975 617 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 ZFP36P26651 326 aaKnown RBP5.98□□□□□ -1.45
SCFD1-221ENST00000556534 SLC6A4P31645 630 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 RNASE9P60153 205 aaKnown RBP5.98□□□□□ -1.45
SCFD1-221ENST00000556534 CRIP3Q6Q6R5 217 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 TPH2Q8IWU9 490 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 CPT1CQ8TCG5 803 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 HPS3Q969F9 1004 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 RGMAQ96B86 450 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 AIFM3Q96NN9 605 aa5.98□□□□□ -1.45
SCFD1-221ENST00000556534 ZNF768Q9H5H4 540 aaKnown RBP5.98□□□□□ -1.45
SCFD1-221ENST00000556534 G3BP2Q9UN86 482 aaKnown RBP5.98□□□□□ -1.45
SCFD1-221ENST00000556534 TCRBV7S2A1N4TA0A589 114 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 NT5C1B-RDH14C9J2C7 533 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 GRM6O15303 877 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 SCAF4O95104 1147 aaKnown RBP5.97□□□□□ -1.45
SCFD1-221ENST00000556534 POMCP01189 267 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 RPLP2P05387 115 aaKnown RBP5.97□□□□□ -1.45
SCFD1-221ENST00000556534 ITGB1P05556 798 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 SBK3P0C264 359 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 CYP2C19P33261 490 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 ZNF267Q14586 743 aaPredicted RBP5.97□□□□□ -1.45
SCFD1-221ENST00000556534 ATAT1Q5SQI0 421 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 AGAP9Q5VTM2 703 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 GADL1Q6ZQY3 521 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 GDF7Q7Z4P5 450 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 ZFPM1Q8IX07 1006 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 MVB12AQ96EY5 273 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 DCLRE1CQ96SD1 692 aaKnown RBP5.97□□□□□ -1.45
SCFD1-221ENST00000556534 TEX101Q9BY14 249 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 KRTAP4-5Q9BYR2 181 aa5.97□□□□□ -1.45
SCFD1-221ENST00000556534 DIRC3C9JPN6 131 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 KIAA0391O15091 583 aaKnown RBP5.96□□□□□ -1.46
SCFD1-221ENST00000556534 ZNF185O15231 689 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 OFD1O75665 1012 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 HAUS5O94927 633 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 PRSS23O95084 383 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 PEX11BO96011 259 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 ALAS1P13196 640 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 MALP21145 153 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 LPOP22079 712 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-221ENST00000556534 FAM189BP81408 668 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 CREMQ03060 361 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 TUBA3CQ13748 450 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 UBXN2BQ14CS0 331 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 PPP2R5AQ15172 486 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 ATP2B3Q16720 1220 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 PGS1Q32NB8 556 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 FLYWCH1Q4VC44 716 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 PABPC1LQ4VXU2 614 aaKnown RBP5.96□□□□□ -1.46
SCFD1-221ENST00000556534 PDCD4Q53EL6 469 aaKnown RBP5.96□□□□□ -1.46
SCFD1-221ENST00000556534 IFIT1BQ5T764 474 aaKnown RBP5.96□□□□□ -1.46
SCFD1-221ENST00000556534 FNDC7Q5VTL7 733 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 IGFL4Q6B9Z1 124 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 TUBA3EQ6PEY2 450 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 SLC4A10Q6U841 1118 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 B3GNT9Q6UX72 402 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 DBX2Q6ZNG2 339 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 MED25Q71SY5 747 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 EPM2AIP1Q7L775 607 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-221ENST00000556534 RHOT2Q8IXI1 618 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 Q8N1X5 172 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 ZNF276Q8N554 614 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 PHACTR3Q96KR7 559 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 PUS7Q96PZ0 661 aaKnown RBP5.96□□□□□ -1.46
SCFD1-221ENST00000556534 MAP3K14Q99558 947 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 VRK1Q99986 396 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-221ENST00000556534 SLC46A2Q9BY10 475 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 NMRK2Q9NPI5 230 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 ANLNQ9NQW6 1124 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 TRPM5Q9NZQ8 1165 aa5.96□□□□□ -1.46
SCFD1-221ENST00000556534 CDHR4A6H8M9 788 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms